myRT

myRT report for GCA_000400405.1_ASM40040v1

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Seq: BAOI01000071.1 Vibrio rotiferianus CAIM 577 = LMG 21460 DNA, contig: contig0071, whole genome shotgun sequence (133166 bp)
Overview 1 RT 1: 123297-128688 bp Neighborhood of RT #1 [123297, 129014] TAS_TAS_TAS_TIGR02293 GIIM RVT_N RVT-GII HsdM FRG Feature: gene Location: 123297-123722 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 123345-123720 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 1 23345-1 23720 bp Feature: gene Location: 124556-125044 bp Feature: domain Description: GIIM Note: maturase Location: 124595-124820 bp Feature: domain Description: GIIM Note: maturase Location: 1 24595-1 24820 bp Feature: gene Location: 125161-126027 bp Feature: domain Description: RVT_N Location: 125209-125452 bp Feature: domain Description: RVT_N Location: 1 25209-1 25452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 125497-125929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 25497-1 25929 bp Feature: gene Location: 126199-126414 bp Feature: gene Location: 126909-129014 bp Feature: domain Description: HsdM Location: 126927-128391 bp Feature: domain Description: HsdM Location: 1 26927-1 28391 bp Feature: domain Description: FRG Location: 128400-128688 bp Feature: domain Description: FRG Location: 1 28400-1 28688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TAS_TAS_TAS_TIGR02293, GIIM (pfam08388), RVT_N (pfam13655), RVT-GII, HsdM (COG0286), FRG (smart00901)

Seq: BAOI01000066.1 Vibrio rotiferianus CAIM 577 = LMG 21460 DNA, contig: contig0066, whole genome shotgun sequence (24432 bp)
Overview 1 RT 1: 20371-24156 bp Neighborhood of RT #1 [20371, 24224] zf-ribbon_3 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 20371-20637 bp Feature: domain Description: zf-ribbon_3 Location: 20566-20635 bp Feature: domain Description: zf-ribbon_3 Location: 2 0566-2 0635 bp Feature: gene Location: 20728-21531 bp Feature: gene Location: 21581-23653 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 21779-22388 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 1779-2 2 388 bp Feature: domain Description: Cas1_I-II-III Location: 22676-23612 bp Feature: domain Description: Cas1_I-II-III Location: 2 2 676-2 3612 bp Feature: gene Location: 23946-24224 bp Feature: domain Description: Cas2_I_II_III Location: 23955-24156 bp Feature: domain Description: Cas2 _I_II_III Location: 2 3955-2 4156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-ribbon_3 (pfam13248), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: BAOI01000033.1 Vibrio rotiferianus CAIM 577 = LMG 21460 DNA, contig: contig0033, whole genome shotgun sequence (117713 bp)
Overview 1 RT 1: 75239-80374 bp Neighborhood of RT #1 [75239, 80397] DUF2188 RVT_N RVT-GII GIIM HNHc groEL Feature: gene Location: 75239-75535 bp Feature: gene Location: 75543-75764 bp Feature: domain Description: DUF2188 Location: 75558-75735 bp Feature: domain Description: DUF2188 Location: 75558-7573 5 bp Feature: gene Location: 75829-77727 bp Feature: domain Description: RVT_N Location: 76102-76345 bp Feature: domain Description: RVT_N Location: 76102-763 45 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76390-77035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 763 90-7703 5 bp Feature: domain Description: GIIM Note: maturase Location: 77086-77320 bp Feature: domain Description: GIIM Note: maturase Location: 77086-773 20 bp Feature: domain Description: HNHc Note: nucleases Location: 77539-77698 bp Feature: domain Description: HNHc Note: nucleases Location: 7753 9-77698 bp Feature: gene Location: 78022-78222 bp Feature: gene Location: 78751-80397 bp Feature: domain Description: groEL Location: 78757-80374 bp Feature: domain Description: groEL Location: 78757-803 74 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), groEL (PRK12852)