myRT

myRT report for GCA_000400895.2_ASM40089v2

Download annotations/find similar RTs

Seq: AQAM01000210.1 Escherichia coli P0304777.2 gecP03047772.contig.210, whole genome shotgun sequence (14474 bp)
Overview 1 RT 1: 4138-9946 bp Neighborhood of RT #1 [4138, 9960] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4138-4941 bp Ori: ENE74353.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4675-4918 bp Feature: domain Description: HTH_ARAC Location: 4675-491 8 bp Feature: gene Location: 5683-5829 bp Ori: ENE74354.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5695-5806 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5695-5806 bp Feature: gene Location: 6020-7123 bp Ori: ENE74355.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6170-6821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 70-6821 bp Feature: domain Description: GIIM Note: maturase Location: 6899-7112 bp Feature: domain Description: GIIM Note: maturase Location: 6899-71 1 2 bp Feature: gene Location: 7807-8406 bp Ori: ENE74356.1 Feature: domain Description: IS285 Location: 7831-8389 bp Feature: domain Description: IS285 Location: 7831 -8389 bp Feature: gene Location: 8869-9960 bp Ori: ENE74357.1 Gene: cfaE Feature: domain Description: CblD Location: 8971-9946 bp Feature: domain Description: CblD Location: 8971 -9946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)

Seq: AQAM01000190.1 Escherichia coli P0304777.2 gecP03047772.contig.190, whole genome shotgun sequence (47583 bp)
Overview 1 RT 1: 12579-16461 bp Neighborhood of RT #1 [12579, 16466] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 12579-13037 bp Ori: ENE77943.1 Gene: dut Feature: domain Description: dut Location: 12585-13032 bp Feature: domain Description: dut Location: 12 585-13032 bp Feature: gene Location: 13144-13740 bp Ori: ENE77944.1 Gene: slmA Feature: domain Description: slmA Location: 13150-13726 bp Feature: domain Description: slmA Location: 13150-1372 6 bp Feature: gene Location: 13786-14745 bp Ori: ENE77945.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13921-14470 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1392 1-14470 bp Feature: gene Location: 15043-15684 bp Ori: ENE77946.1 Gene: pyrE Feature: domain Description: pyrE Location: 15046-15679 bp Feature: domain Description: pyrE Location: 15046-15679 bp Feature: gene Location: 15750-16466 bp Ori: ENE77947.1 Gene: rph Feature: domain Description: rph Location: 15753-16461 bp Feature: domain Description: rph Location: 15753-16461 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQAM01000159.1 Escherichia coli P0304777.2 gecP03047772.contig.159, whole genome shotgun sequence (164738 bp)
Overview 1 RT 1: 84495-88025 bp Neighborhood of RT #1 [84495, 88051] YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 84495-85358 bp Ori: ENE81934.1 Feature: domain Description: YhhI Location: 84498-84858 bp Feature: domain Description: YhhI Location: 84498-84858 bp Feature: domain Description: YhhI Location: 84918-85272 bp Feature: domain Description: YhhI Location: 84918-85272 bp Feature: gene Location: 85462-86220 bp Ori: ENE81935.1 Feature: domain Description: IS285 Location: 85492-86182 bp Feature: domain Description: IS285 Location: 85492-86182 bp Feature: gene Location: 86269-86508 bp Ori: ENE81936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 86386-86494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863 86-86494 bp Feature: gene Location: 87264-87737 bp Ori: ENE81937.1 Feature: domain Description: PRK15434 Location: 87267-87717 bp Feature: domain Description: PRK1543 4 Location: 87267-87717 bp Feature: gene Location: 87740-88051 bp Ori: ENE81938.1 Feature: domain Description: GDP_FS_SDR_e Location: 87830-88025 bp Feature: domain Description: GDP_FS_SDR_e Location: 8783 0-88025 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)