myRT

myRT report for GCA_000401235.1_BacNeaAAU1

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Seq: ASRU01000272.1 Bacillus nealsonii AAU1 contig00272, whole genome shotgun sequence (3598 bp)
Overview 1 RT 1: 1980-3164 bp Neighborhood of RT #1 [1980, 3598] HNHc RVT-GII Feature: gene Location: 1980-2417 bp Feature: gene Location: 2633-2968 bp Ori: EOR21608.1 Feature: domain Description: HNHc Note: nucleases Location: 2705-2846 bp Feature: domain Description: HNHc Note: nucleases Location: 2705-2846 bp Feature: gene Location: 3014-3598 bp Ori: EOR21609.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3020-3164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3020-31 64 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII

Seq: ASRU01000027.1 Bacillus nealsonii AAU1 contig00027, whole genome shotgun sequence (21132 bp)
Overview 1 RT 1: 3846-13449 bp Neighborhood of RT #1 [3846, 13457] PRK09194 polC RVT-GII HNHc polC RimP Feature: gene Location: 3846-5552 bp Ori: EOR26366.1 Feature: domain Description: PRK09194 Location: 3849-5529 bp Feature: domain Description: PRK09194 Location: 3849-552 9 bp Feature: gene Location: 5712-8675 bp Ori: EOR26367.1 Gene: polC Feature: domain Description: polC Location: 5739-8628 bp Feature: domain Description: polC Location: 5739-862 8 bp Feature: gene Location: 9368-11194 bp Ori: EOR26368.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9674-10370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9674-10370 bp Feature: domain Description: HNHc Note: nucleases Location: 10937-11075 bp Feature: domain Description: HNHc Note: nucleases Location: 10937-11075 bp Feature: gene Location: 11276-12709 bp Ori: EOR26369.1 Gene: polC Feature: domain Description: polC Location: 11309-12707 bp Feature: domain Description: polC Location: 11309-12 707 bp Feature: gene Location: 12987-13457 bp Ori: EOR26370.1 Feature: domain Description: RimP Location: 12993-13449 bp Feature: domain Description: RimP Location: 12 993-13449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09194 (prolyl-tRNA synthetase; Provisional), polC (TIGR00354), RVT-GII, HNHc (smart00507), RimP (COG0779)

Seq: ASRU01000328.1 Bacillus nealsonii AAU1 contig00328, whole genome shotgun sequence (1873 bp)
Overview 1 RT 1: 61-1219 bp Neighborhood of RT #1 [61, 1323] RVT-GII GIIM Feature: gene Location: 61-1323 bp Ori: EOR20532.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-922 bp Feature: domain Description: GIIM Note: maturase Location: 1003-1219 bp Feature: domain Description: GIIM Note: maturase Location: 1003 -1219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: ASRU01000293.1 Bacillus nealsonii AAU1 contig00293, whole genome shotgun sequence (18988 bp)
Overview 1 RT 1: 1-4348 bp 2 RT 2: 9937-15741 bp Neighborhood of RT #1 [1, 4348] RVT_N RVT-GII DEXHc_Snf DEXHc_Snf Neighborhood of RT #2 [9937, 15773] Cyt_C5_DNA_methylase RVT-GII HNHc Ssb PRK00024 Feature: gene Location: 1-858 bp Ori: EOR21264.1 Feature: domain Description: RVT_N Location: 55-301 bp Feature: domain Description: RVT_N Location: 55-301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-859 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-859 bp Feature: gene Location: 1432-4035 bp Ori: EOR21265.1 Feature: domain Description: DEXHc_Snf Location: 2248-2626 bp Feature: domain Description: DEXHc_Snf Location: 224 8-2626 bp Feature: domain Description: DEXHc_Snf Location: 3052-3346 bp Feature: domain Description: DEXHc_Snf Location: 3052-334 6 bp Feature: gene Location: 4109-4348 bp Feature: gene Location: 9937-10941 bp Ori: EOR21271.1 Feature: domain Description: Cyt_C5_DNA_methylase Location: 9943-10879 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 994 3-10879 bp Feature: gene Location: 10953-11762 bp Feature: gene Location: 12116-13915 bp Ori: EOR21273.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12410-13112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124 10-13112 bp Feature: domain Description: HNHc Note: nucleases Location: 13655-13799 bp Feature: domain Description: HNHc Note: nucleases Location: 13655-13799 bp Feature: gene Location: 14713-15117 bp Ori: EOR21274.1 Feature: domain Description: Ssb Location: 14716-15082 bp Feature: domain Description: Ssb Location: 14 716-15082 bp Feature: gene Location: 15114-15773 bp Ori: EOR21275.1 Feature: domain Description: PRK00024 Location: 15213-15741 bp Feature: domain Description: PRK00024 Location: 15213-1574 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, DEXHc_Snf (cd17919), Cyt_C5_DNA_methylase (cl30459), HNHc (smart00507), Ssb (COG0629), PRK00024 (DNA repair protein RadC)

Seq: ASRU01000296.1 Bacillus nealsonii AAU1 contig00296, whole genome shotgun sequence (22610 bp)
Overview 1 RT 1: 1-3201 bp Neighborhood of RT #1 [1, 3201] RVT-GII nicotinamidase_related Feature: gene Location: 1-141 bp Feature: gene Location: 113-841 bp Ori: EOR21186.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 410-785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 410-785 bp Feature: gene Location: 1648-2166 bp Ori: EOR21187.1 Feature: domain Description: nicotinamidase_related Location: 1660-2110 bp Feature: domain Description: nicotinamidase_related Location: 1660-2110 bp Feature: gene Location: 2362-3201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, nicotinamidase_related (cd01014)

Seq: ASRU01000235.1 Bacillus nealsonii AAU1 contig00235, whole genome shotgun sequence (15157 bp)
Overview 1 RT 1: 8750-14175 bp Neighborhood of RT #1 [8750, 14177] RVT-GII GIIM RVT-GII arb Feature: gene Location: 8750-9184 bp Feature: gene Location: 9360-9788 bp Feature: gene Location: 10450-11286 bp Ori: EOR22279.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10453-10852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10453-10852 bp Feature: domain Description: GIIM Note: maturase Location: 10909-11140 bp Feature: domain Description: GIIM Note: maturase Location: 10909-11140 bp Feature: gene Location: 11247-11441 bp Ori: EOR22280.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11253-11400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11253-11400 bp Feature: gene Location: 11974-12363 bp Feature: gene Location: 12723-14177 bp Ori: EOR22282.1 Feature: domain Description: arb Location: 12729-14175 bp Feature: domain Description: arb Location: 12729-14175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), arb (PRK09593)

Seq: ASRU01000088.1 Bacillus nealsonii AAU1 contig00088, whole genome shotgun sequence (17253 bp)
Overview 1 RT 1: 71-5205 bp Neighborhood of RT #1 [71, 5205] PRK07726 RVT-GII HNHc PRK07726 Feature: gene Location: 71-1126 bp Ori: EOR24346.1 Feature: domain Description: PRK07726 Location: 140-932 bp Feature: domain Description: PRK07 7 26 Location: 140-932 bp Feature: gene Location: 1161-2987 bp Ori: EOR24347.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1455-2151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1455-2151 bp Feature: domain Description: HNHc Note: nucleases Location: 2712-2853 bp Feature: domain Description: HNHc Note: nucleases Location: 27 12-2853 bp Feature: gene Location: 3677-4783 bp Ori: EOR24348.1 Feature: domain Description: PRK07726 Location: 3683-4769 bp Feature: domain Description: PRK07 7 26 Location: 3683-47 69 bp Feature: gene Location: 5047-5205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07726 (DNA topoisomerase 3), RVT-GII, HNHc (smart00507)

Seq: ASRU01000212.1 Bacillus nealsonii AAU1 contig00212, whole genome shotgun sequence (904 bp)
Overview 1 RT 1: 1-904 bp Neighborhood of RT #1 [1, 904] RVT-GII Feature: gene Location: 1-904 bp Ori: EOR22613.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238-904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238 -904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII