myRT

myRT report for GCA_000403155.2_Bact_thet_dnLKV9_V1

Download annotations/find similar RTs

Seq: KE159459.1 Bacteroides thetaiotaomicron dnLKV9 genomic scaffold acPFk-supercont1.1, whole genome shotgun sequence (3741630 bp)
Overview 1 RT 1: 526161-531912 bp 2 RT 2: 1110994-1116641 bp 3 RT 3: 2856084-2868846 bp 4 RT 4: 2931455-2937044 bp Neighborhood of RT #1 [526161, 532013] ADOP ADOP RVT-GII GIIM Acetyltransf_1 Neighborhood of RT #2 [1110994, 1116646] dTDP_HR_like_SDR_e RVT-GII GIIM AraC AraC Neighborhood of RT #3 [2856084, 2868846] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Neighborhood of RT #4 [2931455, 2937403] RVT-DGRs SMC_prok_B Feature: gene Location: 526161-528581 bp Feature: domain Description: ADOP Location: 526515-526746 bp Feature: domain Description: ADOP Location: 52651 5-526746 bp Feature: domain Description: ADOP Location: 526863-528579 bp Feature: domain Description: ADOP Location: 526863-528579 bp Feature: gene Location: 528627-528791 bp Feature: gene Location: 529227-530618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529554-530172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 529554-5301 72 bp Feature: domain Description: GIIM Note: maturase Location: 530223-530448 bp Feature: domain Description: GIIM Note: maturase Location: 530223-530448 bp Feature: gene Location: 530753-531535 bp Feature: gene Location: 531525-532013 bp Feature: domain Description: Acetyltransf_1 Location: 531627-531912 bp Feature: domain Description: Acetyltransf_1 Location: 531 627-531 91 2 bp Feature: gene Location: 1110994-1111206 bp Feature: gene Location: 1111510-1112418 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 1111522-1112395 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 1 1 1 1 522-1 1 1 2395 bp Feature: gene Location: 1112815-1114206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1113142-1113760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 31 42-1 1 1 3760 bp Feature: domain Description: GIIM Note: maturase Location: 1113811-1114036 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 381 1 -1 1 1 4036 bp Feature: gene Location: 1114810-1115658 bp Feature: domain Description: AraC Location: 1115320-1115644 bp Feature: domain Description: AraC Location: 1 1 1 5320-1 1 1 5644 bp Feature: gene Location: 1115744-1116646 bp Feature: domain Description: AraC Location: 1116200-1116641 bp Feature: domain Description: AraC Location: 1 1 1 6200-1 1 1 6641 bp Feature: gene Location: 2856084-2857883 bp Feature: domain Description: rpsA Location: 2856153-2857767 bp Feature: domain Description: rpsA Location: 28561 53-2857767 bp Feature: gene Location: 2858052-2863880 bp Feature: domain Description: DUF4011 Location: 2859207-2859720 bp Feature: domain Description: DUF401 1 Location: 2859207-2859720 bp Feature: domain Description: DEXXQc_SF1 Location: 2860059-2860614 bp Feature: domain Description: DEXXQc_SF1 Location: 2860059-286061 4 bp Feature: domain Description: DEXXQc_SF1 Location: 2861496-2862246 bp Feature: domain Description: DEXXQc_SF1 Location: 2861 496-2862246 bp Feature: domain Description: TIGR00376 Location: 2862378-2862768 bp Feature: domain Description: TIGR00376 Location: 2862378-2862768 bp Feature: domain Description: MTES_1575 Location: 2862918-2863206 bp Feature: domain Description: MTES_1 575 Location: 286291 8-2863206 bp Feature: domain Description: DUF3320 Location: 2863386-2863530 bp Feature: domain Description: DUF3320 Location: 2863386-2863530 bp Feature: gene Location: 2863914-2865047 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2864238-2864790 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2864238-2864790 bp Feature: gene Location: 2865253-2867439 bp Feature: gene Location: 2868337-2868846 bp Feature: gene Location: 2931455-2932207 bp Feature: gene Location: 2932441-2932815 bp Feature: gene Location: 2932825-2934168 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2933023-2933689 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2933023-2933689 bp Feature: gene Location: 2934583-2936133 bp Feature: gene Location: 2936147-2937403 bp Feature: domain Description: SMC_prok_B Location: 2936279-2937044 bp Feature: domain Description: SMC_prok_B Location: 2936279-2937044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ADOP (TIGR03434), RVT-GII, GIIM (pfam08388), Acetyltransf_1 (pfam00583), dTDP_HR_like_SDR_e (cd05254), AraC (COG2207), rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative)
MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, RVT-DGRs, SMC_prok_B (TIGR02168)

Seq: KE159461.1 Bacteroides thetaiotaomicron dnLKV9 genomic scaffold acPFk-supercont1.3, whole genome shotgun sequence (713126 bp)
Overview 1 RT 1: 631760-638029 bp Neighborhood of RT #1 [631760, 638029] PccA TRX_family RVT-GII GIIM PncB_like Feature: gene Location: 631760-633271 bp Feature: domain Description: PccA Location: 631763-633197 bp Feature: domain Description: PccA Location: 631763-633197 bp Feature: gene Location: 633805-634128 bp Feature: domain Description: TRX_family Location: 633850-634108 bp Feature: domain Description: TRX_family Location: 633850-634108 bp Feature: gene Location: 634732-636123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 635059-635677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 635059-635677 bp Feature: domain Description: GIIM Note: maturase Location: 635728-635953 bp Feature: domain Description: GIIM Note: maturase Location: 63572 8-635953 bp Feature: gene Location: 636245-637414 bp Feature: domain Description: PncB_like Location: 636257-637361 bp Feature: domain Description: PncB_like Location: 6362 57-637361 bp Feature: gene Location: 637499-638029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PccA (COG4770), TRX_family (cd02947), RVT-GII, GIIM (pfam08388), PncB_like (cd01401)