myRT

myRT report for GCA_000403175.2_Bact_unif_dnLKV2_V1

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Seq: KE159488.1 Bacteroides uniformis dnLKV2 genomic scaffold acPFr-supercont1.5, whole genome shotgun sequence (596918 bp)
Overview 1 RT 1: 156189-163208 bp Neighborhood of RT #1 [156189, 163228] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 Bac_Flav_CT_J Feature: gene Location: 156189-156521 bp Feature: domain Description: DUF4133 Location: 156207-156474 bp Feature: domain Description: DUF41 33 Location: 1 56207-1 56474 bp Feature: gene Location: 156518-158914 bp Feature: domain Description: Bac_Flav_CT_G Location: 156521-158903 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 56521 -1 58903 bp Feature: gene Location: 159483-161306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159747-160569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 59747-1 60569 bp Feature: domain Description: Intron_maturas2 Location: 160743-160986 bp Feature: domain Description: Intron_maturas2 Location: 1 60743-1 60986 bp Feature: domain Description: HNHc Note: nucleases Location: 161097-161268 bp Feature: domain Description: HNHc Note: nucleases Location: 1 61 097-1 61 268 bp Feature: gene Location: 161576-162205 bp Feature: domain Description: DUF4141 Location: 161591-161744 bp Feature: domain Description: DUF41 41 Location: 1 61 591 -1 61 744 bp Feature: gene Location: 162224-163228 bp Feature: domain Description: Bac_Flav_CT_J Location: 162248-163208 bp Feature: domain Description: Bac_Flav_CT_J Location: 1 62248-1 63208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), Bac_Flav_CT_J (TIGR03782)

Seq: KE159489.1 Bacteroides uniformis dnLKV2 genomic scaffold acPFr-supercont1.6, whole genome shotgun sequence (335058 bp)
Overview 1 RT 1: 24236-37730 bp 2 RT 2: 164626-168389 bp Neighborhood of RT #1 [24236, 37759] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Neighborhood of RT #2 [164626, 168460] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 24236-24964 bp Feature: gene Location: 25166-25402 bp Feature: domain Description: DUF4134 Location: 25211-25388 bp Feature: domain Description: DUF4134 Location: 2 52 11-2 5388 bp Feature: gene Location: 26018-27673 bp Feature: RT Description: RVT_N Location: 26075-26312 bp Feature: RT Description: RVT_N Location: 2 6075-2 6312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26363-27011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6363-2 7011 bp Feature: domain Description: GIIM Note: maturase Location: 27068-27299 bp Feature: domain Description: GIIM Note: maturase Location: 2 7068-2 72 99 bp Feature: gene Location: 27670-27912 bp Feature: domain Description: DUF4134 Location: 27817-27907 bp Feature: domain Description: DUF4134 Location: 2 7817-2 7907 bp Feature: gene Location: 27924-28256 bp Feature: domain Description: DUF4133 Location: 27942-28212 bp Feature: domain Description: DUF4133 Location: 2 7942 -2 82 12 bp Feature: gene Location: 28253-30652 bp Feature: domain Description: Bac_Flav_CT_G Location: 28256-30644 bp Feature: domain Description: Bac_Flav_CT_G Location: 2 82 56-30644 bp Feature: gene Location: 31221-33044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31485-32307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31485-32 307 bp Feature: domain Description: Intron_maturas2 Location: 32481-32724 bp Feature: domain Description: Intron_maturas2 Location: 32 481-32 72 4 bp Feature: domain Description: HNHc Note: nucleases Location: 32835-33006 bp Feature: domain Description: HNHc Note: nucleases Location: 32 835-33006 bp Feature: gene Location: 33303-33683 bp Feature: domain Description: DUF3876 Location: 33384-33648 bp Feature: domain Description: DUF3876 Location: 33384-33648 bp Feature: gene Location: 33707-33919 bp Feature: domain Description: DUF4141 Location: 33719-33875 bp Feature: domain Description: DUF4141 Location: 33719-33875 bp Feature: gene Location: 34543-36225 bp Feature: RT Description: RVT_N Location: 34597-34840 bp Feature: RT Description: RVT_N Location: 34597-34840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34885-35539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34885-35539 bp Feature: domain Description: GIIM Note: maturase Location: 35593-35824 bp Feature: domain Description: GIIM Note: maturase Location: 35593-3582 4 bp Feature: gene Location: 36209-36751 bp Feature: gene Location: 36755-37759 bp Feature: domain Description: Bac_Flav_CT_J Location: 36761-37730 bp Feature: domain Description: Bac_Flav_CT_J Location: 36761-37730 bp Feature: gene Location: 164626-165960 bp Feature: gene Location: 166004-166348 bp Feature: gene Location: 166653-167639 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 166812-167496 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 166812 -167496 bp Feature: gene Location: 167617-167988 bp Feature: gene Location: 167990-168460 bp Feature: domain Description: Phage_holin_4_1 Location: 168077-168389 bp Feature: domain Description: Phage_holin_4_1 Location: 168077-168389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), DUF4141 (pfam13605)
Bac_Flav_CT_J (TIGR03782), RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: KE159487.1 Bacteroides uniformis dnLKV2 genomic scaffold acPFr-supercont1.4, whole genome shotgun sequence (626145 bp)
Overview 1 RT 1: 425872-431472 bp Neighborhood of RT #1 [425872, 431472] RVT-DGRs Feature: gene Location: 425872-426114 bp Feature: gene Location: 426300-426695 bp Feature: gene Location: 426698-428338 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 426908-427715 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 426908-427715 bp Feature: gene Location: 428877-430352 bp Feature: gene Location: 430387-431472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: KE159490.1 Bacteroides uniformis dnLKV2 genomic scaffold acPFr-supercont1.7, whole genome shotgun sequence (97180 bp)
Overview 1 RT 1: 7429-10923 bp Neighborhood of RT #1 [7429, 11684] Bac_Flav_CT_N RVT-GII PRK06526 COG4584 COG4584 Feature: gene Location: 7429-7854 bp Feature: domain Description: Bac_Flav_CT_N Location: 7432-7834 bp Feature: domain Description: Bac_Flav_CT_N Location: 74 32-7834 bp Feature: gene Location: 7873-8361 bp Feature: gene Location: 8396-9208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8660-9116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8660-9116 bp Feature: gene Location: 9273-10049 bp Feature: domain Description: PRK06526 Location: 9324-10029 bp Feature: domain Description: PRK06526 Location: 9324 -10029 bp Feature: gene Location: 10071-11684 bp Feature: domain Description: COG4584 Location: 10107-10185 bp Feature: domain Description: COG4 584 Location: 10107-10185 bp Feature: domain Description: COG4584 Location: 10416-10923 bp Feature: domain Description: COG4 584 Location: 104 16-10923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), Bac_Flav_CT_N (TIGR03780), RVT-GII, PRK06526 (transposase; Provisional)

Seq: KE159485.1 Bacteroides uniformis dnLKV2 genomic scaffold acPFr-supercont1.2, whole genome shotgun sequence (954504 bp)
Overview 1 RT 1: 944196-949857 bp Neighborhood of RT #1 [944196, 950570] RteC TraG-D_C RVT_N RVT-GII GIIM YWFCY Relaxase Feature: gene Location: 944196-944801 bp Feature: domain Description: RteC Location: 944499-944772 bp Feature: domain Description: RteC Location: 944499-944772 bp Feature: gene Location: 944866-946035 bp Feature: domain Description: TraG-D_C Location: 945412-945742 bp Feature: domain Description: TraG-D_C Location: 945 412-945 742 bp Feature: gene Location: 946076-947728 bp Feature: RT Description: RVT_N Location: 946130-946373 bp Feature: RT Description: RVT_N Location: 946130-946373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946418-947066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 946418-947066 bp Feature: domain Description: GIIM Note: maturase Location: 947120-947351 bp Feature: domain Description: GIIM Note: maturase Location: 947120-94735 1 bp Feature: gene Location: 948366-949292 bp Feature: domain Description: YWFCY Location: 948375-948552 bp Feature: domain Description: YWFCY Location: 948375 -9485 5 2 bp Feature: gene Location: 949323-950570 bp Feature: domain Description: Relaxase Location: 949452-949857 bp Feature: domain Description: Relaxase Location: 94945 2-94985 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RteC (pfam09357), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), Relaxase (pfam03432)