myRT

myRT report for GCA_000403235.2_Bact_vulg_dnLKV7_V1

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Seq: KE159476.1 Bacteroides vulgatus dnLKV7 genomic scaffold acPFq-supercont1.4, whole genome shotgun sequence (395306 bp)
Overview 1 RT 1: 189749-195781 bp Neighborhood of RT #1 [189749, 196083] Arm-DNA-bind_5 Phage_int_SAM_5 DDE_Tnp_1_3 RVT-GII Intron_maturas2 PHA00684 Feature: gene Location: 189749-190543 bp Feature: domain Description: Arm-DNA-bind_5 Location: 189773-189998 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 89773-1 89998 bp Feature: domain Description: Phage_int_SAM_5 Location: 190055-190337 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 90055-1 90337 bp Feature: gene Location: 190427-191332 bp Feature: domain Description: DDE_Tnp_1_3 Location: 190757-191222 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 90757-1 91 222 bp Feature: gene Location: 191906-193501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192170-192992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 921 70-1 92992 bp Feature: domain Description: Intron_maturas2 Location: 193070-193364 bp Feature: domain Description: Intron_maturas2 Location: 1 93070-1 93364 bp Feature: gene Location: 194492-195148 bp Feature: gene Location: 195430-196083 bp Feature: domain Description: PHA00684 Location: 195481-195781 bp Feature: domain Description: PHA00684 Location: 1 95481 -1 95781 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), DDE_Tnp_1_3 (pfam13612), RVT-GII, Intron_maturas2 (pfam01348), PHA00684 (hypothetical protein)

Seq: KE159468.1 Bacteroides vulgatus dnLKV7 genomic scaffold acPFq-supercont1.12, whole genome shotgun sequence (97942 bp)
Overview 1 RT 1: 93178-97153 bp Neighborhood of RT #1 [93178, 97197] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 93178-93906 bp Feature: gene Location: 94108-94344 bp Feature: domain Description: DUF4134 Location: 94153-94330 bp Feature: domain Description: DUF4134 Location: 94153-94330 bp Feature: gene Location: 94960-96615 bp Feature: RT Description: RVT_N Location: 95017-95254 bp Feature: RT Description: RVT_N Location: 95017-952 54 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95305-95953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95305-95953 bp Feature: domain Description: GIIM Note: maturase Location: 96010-96241 bp Feature: domain Description: GIIM Note: maturase Location: 96010-962 41 bp Feature: gene Location: 96612-96854 bp Feature: domain Description: DUF4134 Location: 96759-96849 bp Feature: domain Description: DUF4134 Location: 96759-96849 bp Feature: gene Location: 96865-97197 bp Feature: domain Description: DUF4133 Location: 96883-97153 bp Feature: domain Description: DUF4133 Location: 96883-97153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: KE159475.1 Bacteroides vulgatus dnLKV7 genomic scaffold acPFq-supercont1.3, whole genome shotgun sequence (422052 bp)
Overview 1 RT 1: 2214-6262 bp 2 RT 2: 140883-154377 bp 3 RT 3: 156747-160795 bp Neighborhood of RT #1 [2214, 6267] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Neighborhood of RT #2 [140883, 154406] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Neighborhood of RT #3 [156747, 160800] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 2214-2639 bp Feature: domain Description: Bac_Flav_CT_N Location: 2217-2619 bp Feature: domain Description: Bac_Flav_CT_N Location: 2217-2619 bp Feature: gene Location: 2658-3146 bp Feature: gene Location: 3181-4992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3445-4267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 445-4267 bp Feature: domain Description: Intron_maturas2 Location: 4339-4648 bp Feature: domain Description: Intron_maturas2 Location: 43 3 9-4648 bp Feature: gene Location: 4976-5689 bp Feature: domain Description: Bac_Flav_CT_N Location: 5105-5666 bp Feature: domain Description: Bac_Flav_CT_N Location: 5105-5666 bp Feature: gene Location: 5692-6267 bp Feature: domain Description: TraO Location: 5767-6262 bp Feature: domain Description: TraO Location: 5767-6262 bp Feature: gene Location: 140883-141611 bp Feature: gene Location: 141813-142049 bp Feature: domain Description: DUF4134 Location: 141858-142035 bp Feature: domain Description: DUF413 4 Location: 141858-14203 5 bp Feature: gene Location: 142665-144320 bp Feature: RT Description: RVT_N Location: 142722-142959 bp Feature: RT Description: RVT_N Location: 142722-142959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143010-143658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143 010-143 658 bp Feature: domain Description: GIIM Note: maturase Location: 143715-143946 bp Feature: domain Description: GIIM Note: maturase Location: 143 715-143 946 bp Feature: gene Location: 144317-144559 bp Feature: domain Description: DUF4134 Location: 144464-144554 bp Feature: domain Description: DUF413 4 Location: 144464-144554 bp Feature: gene Location: 144571-144903 bp Feature: domain Description: DUF4133 Location: 144589-144859 bp Feature: domain Description: DUF413 3 Location: 144589-144859 bp Feature: gene Location: 144900-147299 bp Feature: domain Description: Bac_Flav_CT_G Location: 144903-147291 bp Feature: domain Description: Bac_Flav_CT_G Location: 144903 -147291 bp Feature: gene Location: 147868-149691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148132-148954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14813 2-148954 bp Feature: domain Description: Intron_maturas2 Location: 149128-149371 bp Feature: domain Description: Intron_maturas2 Location: 149128-1493 71 bp Feature: domain Description: HNHc Note: nucleases Location: 149482-149653 bp Feature: domain Description: HNHc Note: nucleases Location: 149482-149653 bp Feature: gene Location: 149944-150330 bp Feature: domain Description: DUF3876 Location: 150031-150295 bp Feature: domain Description: DUF3 876 Location: 15003 1-150295 bp Feature: gene Location: 150354-150566 bp Feature: domain Description: DUF4141 Location: 150366-150522 bp Feature: domain Description: DUF4141 Location: 1503 66-150522 bp Feature: gene Location: 151190-152872 bp Feature: RT Description: RVT_N Location: 151244-151487 bp Feature: RT Description: RVT_N Location: 151244-151487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151532-152186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15153 2-152186 bp Feature: domain Description: GIIM Note: maturase Location: 152240-152471 bp Feature: domain Description: GIIM Note: maturase Location: 152240-152471 bp Feature: gene Location: 152856-153398 bp Feature: gene Location: 153402-154406 bp Feature: domain Description: Bac_Flav_CT_J Location: 153411-154377 bp Feature: domain Description: Bac_Flav_CT_J Location: 153 411-1543 77 bp Feature: gene Location: 156747-157172 bp Feature: domain Description: Bac_Flav_CT_N Location: 156750-157152 bp Feature: domain Description: Bac_Flav_CT_N Location: 156750-157152 bp Feature: gene Location: 157191-157679 bp Feature: gene Location: 157714-159525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157978-158800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 157978-158800 bp Feature: domain Description: Intron_maturas2 Location: 158872-159181 bp Feature: domain Description: Intron_maturas2 Location: 158872-159181 bp Feature: gene Location: 159509-160222 bp Feature: domain Description: Bac_Flav_CT_N Location: 159638-160202 bp Feature: domain Description: Bac_Flav_CT_N Location: 15963 8-160202 bp Feature: gene Location: 160225-160800 bp Feature: domain Description: TraO Location: 160300-160795 bp Feature: domain Description: TraO Location: 1603 00-160795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626), DUF4134 (pfam13572), RVT_N (pfam13655), GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), HNHc (smart00507)
DUF3876 (pfam12992), DUF4141 (pfam13605), Bac_Flav_CT_J (TIGR03782)

Seq: KE159474.1 Bacteroides vulgatus dnLKV7 genomic scaffold acPFq-supercont1.2, whole genome shotgun sequence (1080775 bp)
Overview 1 RT 1: 778654-783384 bp 2 RT 2: 797703-803925 bp Neighborhood of RT #1 [778654, 783384] Bac_Flav_CT_J RVT_N RVT-GII GIIM DUF4141 Neighborhood of RT #2 [797703, 804188] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C DUF4326 Feature: gene Location: 778654-779658 bp Feature: domain Description: Bac_Flav_CT_J Location: 778675-779638 bp Feature: domain Description: Bac_Flav_CT_J Location: 778675-779638 bp Feature: gene Location: 779678-780220 bp Feature: gene Location: 780204-781886 bp Feature: RT Description: RVT_N Location: 780258-780501 bp Feature: RT Description: RVT_N Location: 780258-780501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780546-781200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78054 6-781200 bp Feature: domain Description: GIIM Note: maturase Location: 781254-781485 bp Feature: domain Description: GIIM Note: maturase Location: 781254 -7814 85 bp Feature: gene Location: 782510-782722 bp Feature: domain Description: DUF4141 Location: 782522-782678 bp Feature: domain Description: DUF4 14 1 Location: 782522-782678 bp Feature: gene Location: 782764-783384 bp Feature: gene Location: 797703-798956 bp Feature: domain Description: Relaxase Location: 797880-798186 bp Feature: domain Description: Relaxase Location: 797880-798186 bp Feature: domain Description: Relaxase Location: 798447-798744 bp Feature: domain Description: Relaxase Location: 7984 4 7-79874 4 bp Feature: gene Location: 798993-799916 bp Feature: domain Description: YWFCY Location: 798999-799176 bp Feature: domain Description: YWFCY Location: 798999-799176 bp Feature: gene Location: 800554-802206 bp Feature: RT Description: RVT_N Location: 800608-800851 bp Feature: RT Description: RVT_N Location: 800608-800851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800896-801544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 800896-80154 4 bp Feature: domain Description: GIIM Note: maturase Location: 801598-801829 bp Feature: domain Description: GIIM Note: maturase Location: 801598-801829 bp Feature: gene Location: 802247-803437 bp Feature: domain Description: TraG-D_C Location: 802793-803126 bp Feature: domain Description: TraG-D_C Location: 802793-803126 bp Feature: gene Location: 803655-804188 bp Feature: domain Description: DUF4326 Location: 803670-803925 bp Feature: domain Description: DUF4 326 Location: 803670-803925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4141 (pfam13605), Relaxase (pfam03432), YWFCY (pfam14293), TraG-D_C (pfam12696), DUF4326 (pfam14216)