myRT

myRT report for GCA_000403275.2_Lach_bact_28-4_V1

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Seq: KE159601.1 Lachnospiraceae bacterium 28-4 genomic scaffold acPFn-supercont1.4, whole genome shotgun sequence (258517 bp)
Overview 1 RT 1: 41762-45591 bp Neighborhood of RT #1 [41762, 45623] HTH_XRE RpoE RVT-GII GIIM prfB Feature: gene Location: 41762-42103 bp Feature: domain Description: HTH_XRE Location: 41792-41960 bp Feature: domain Description: HTH_XRE Location: 41 792-41 960 bp Feature: gene Location: 42130-42669 bp Feature: domain Description: RpoE Location: 42139-42622 bp Feature: domain Description: RpoE Location: 421 39-42622 bp Feature: gene Location: 42762-44066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42963-43581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42963-43581 bp Feature: domain Description: GIIM Note: maturase Location: 43635-43845 bp Feature: domain Description: GIIM Note: maturase Location: 43635-43845 bp Feature: gene Location: 44421-44600 bp Feature: gene Location: 44619-45623 bp Feature: domain Description: prfB Location: 44622-45591 bp Feature: domain Description: prfB Location: 44622-45591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RpoE (COG3343), RVT-GII, GIIM (pfam08388), prfB (TIGR00020)

Seq: KE159598.1 Lachnospiraceae bacterium 28-4 genomic scaffold acPFn-supercont1.1, whole genome shotgun sequence (1640821 bp)
Overview 1 RT 1: 46349-51667 bp 2 RT 2: 926975-931658 bp 3 RT 3: 1300221-1306417 bp Neighborhood of RT #1 [46349, 51675] Maff2 COG3547 RVT-GII HNHc YozG TnpV Neighborhood of RT #2 [926975, 931810] Coat_F RVT-GII GIIM Acetyltransf_1 FbpA KOG2030 Neighborhood of RT #3 [1300221, 1306524] TnpV YozG RVT-GII HNHc VirD4 DUF3801 Feature: gene Location: 46349-46480 bp Feature: domain Description: Maff2 Location: 46352-46478 bp Feature: domain Description: Maff2 Location: 46352 -46478 bp Feature: gene Location: 47249-48484 bp Feature: domain Description: COG3547 Location: 47276-48341 bp Feature: domain Description: COG3547 Location: 472 76-48341 bp Feature: gene Location: 48838-50712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49165-49903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49165-49903 bp Feature: domain Description: HNHc Note: nucleases Location: 50446-50599 bp Feature: domain Description: HNHc Note: nucleases Location: 50446-50599 bp Feature: gene Location: 51066-51338 bp Feature: domain Description: YozG Location: 51075-51276 bp Feature: domain Description: YozG Location: 51075-512 76 bp Feature: gene Location: 51298-51675 bp Feature: domain Description: TnpV Location: 51343-51667 bp Feature: domain Description: TnpV Location: 51343-51667 bp Feature: gene Location: 926975-927160 bp Feature: gene Location: 927173-927427 bp Feature: domain Description: Coat_F Location: 927179-927365 bp Feature: domain Description: Coat_F Location: 92 7179-92 7365 bp Feature: gene Location: 927978-929282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928179-928797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 8179-92 8797 bp Feature: domain Description: GIIM Note: maturase Location: 928851-929061 bp Feature: domain Description: GIIM Note: maturase Location: 92 8851-92 9061 bp Feature: gene Location: 929354-930028 bp Feature: domain Description: Acetyltransf_1 Location: 929432-929699 bp Feature: domain Description: Acetyltransf_1 Location: 92 9432 -92 9699 bp Feature: gene Location: 930068-931810 bp Feature: domain Description: FbpA Location: 930080-931427 bp Feature: domain Description: FbpA Location: 930080-93142 7 bp Feature: domain Description: KOG2030 Location: 931451-931658 bp Feature: domain Description: KOG2 030 Location: 931451-931658 bp Feature: gene Location: 1300221-1300598 bp Feature: domain Description: TnpV Location: 1300266-1300590 bp Feature: domain Description: TnpV Location: 13002 66-1300590 bp Feature: gene Location: 1300558-1300830 bp Feature: domain Description: YozG Location: 1300567-1300765 bp Feature: domain Description: YozG Location: 1300567-1300765 bp Feature: gene Location: 1301166-1303040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301493-1302231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301493-1302 2 31 bp Feature: domain Description: HNHc Note: nucleases Location: 1302768-1302927 bp Feature: domain Description: HNHc Note: nucleases Location: 1302 768-1302 92 7 bp Feature: gene Location: 1304276-1306057 bp Feature: domain Description: VirD4 Location: 1304534-1305926 bp Feature: domain Description: VirD4 Location: 1304534-130592 6 bp Feature: gene Location: 1306054-1306524 bp Feature: domain Description: DUF3801 Location: 1306129-1306417 bp Feature: domain Description: DUF3801 Location: 130612 9-1306417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), COG3547 (Transposase ), RVT-GII, HNHc (smart00507), YozG (COG3655), TnpV (pfam14198), Coat_F (pfam07875), GIIM (pfam08388), Acetyltransf_1 (pfam00583), FbpA (pfam05833)
KOG2030 (KOG2030, Predicted RNA-binding protein ), VirD4 (COG3505), DUF3801 (pfam12687)

Seq: KE159599.1 Lachnospiraceae bacterium 28-4 genomic scaffold acPFn-supercont1.2, whole genome shotgun sequence (1382879 bp)
Overview 1 RT 1: 1195517-1200080 bp Neighborhood of RT #1 [1195517, 1200080] HicB HicA_toxin RVT-GII GIIM tolA_full Feature: gene Location: 1195517-1195915 bp Feature: domain Description: HicB Location: 1195535-1195736 bp Feature: domain Description: HicB Location: 119553 5-119573 6 bp Feature: gene Location: 1195945-1196133 bp Feature: domain Description: HicA_toxin Location: 1195963-1196128 bp Feature: domain Description: HicA_toxin Location: 1195963 -1196128 bp Feature: gene Location: 1196298-1197602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196499-1197117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1196499-1197117 bp Feature: domain Description: GIIM Note: maturase Location: 1197171-1197381 bp Feature: domain Description: GIIM Note: maturase Location: 1197171-11973 81 bp Feature: gene Location: 1198760-1199719 bp Feature: domain Description: tolA_full Location: 1199204-1199564 bp Feature: domain Description: tolA_full Location: 1199204-1199564 bp Feature: gene Location: 1199931-1200080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), HicA_toxin (pfam07927), RVT-GII, GIIM (pfam08388), tolA_full (TIGR02794)

Seq: KE159602.1 Lachnospiraceae bacterium 28-4 genomic scaffold acPFn-supercont1.5, whole genome shotgun sequence (83987 bp)
Overview 1 RT 1: 39615-45580 bp Neighborhood of RT #1 [39615, 45606] UPF0236 RVT-GII GIIM ARO8 ECF-ribofla_trS Feature: gene Location: 39615-40067 bp Feature: domain Description: UPF0236 Location: 39627-40053 bp Feature: domain Description: UPF0236 Location: 39627-4 0053 bp Feature: gene Location: 40513-40598 bp Feature: gene Location: 41768-43072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42023-42710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 2023-4 2710 bp Feature: domain Description: GIIM Note: maturase Location: 42791-42992 bp Feature: domain Description: GIIM Note: maturase Location: 4 2791-4 2992 bp Feature: gene Location: 43534-44943 bp Feature: domain Description: ARO8 Location: 43603-44917 bp Feature: domain Description: ARO8 Location: 4 3603-4 4 917 bp Feature: gene Location: 45061-45606 bp Feature: domain Description: ECF-ribofla_trS Location: 45070-45580 bp Feature: domain Description: ECF-ribofla_trS Location: 4 5070-4 5580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UPF0236 (pfam06782), RVT-GII, GIIM (pfam08388), ARO8 (COG1167), ECF-ribofla_trS (pfam07155)