myRT

myRT report for GCA_000403295.2_Lach_bact_M18-1_V1

Download annotations/find similar RTs

Seq: KE159605.1 Lachnospiraceae bacterium M18-1 genomic scaffold acPFy-supercont1.1, whole genome shotgun sequence (2074804 bp)
Overview 1 RT 1: 1680428-1686546 bp Neighborhood of RT #1 [1680428, 1686545] YhcG dnaG RVT-UNC galliderm_ABC Feature: gene Location: 1680428-1681474 bp Ori: EOS39630.1 Feature: domain Description: YhcG Location: 1680746-1681229 bp Feature: domain Description: YhcG Location: 1 680746-1 681 229 bp Feature: gene Location: 1681792-1682775 bp Feature: gene Location: 1682750-1685698 bp Ori: EOS39632.1 Feature: domain Description: dnaG Location: 1682831-1684004 bp Feature: domain Description: dnaG Location: 1 682831 -1 684004 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1684691-1685204 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 684691 -1 685204 bp Feature: gene Location: 1686038-1686185 bp Feature: gene Location: 1686366-1686545 bp Ori: EOS39590.1 Feature: domain Description: galliderm_ABC Location: 1686384-1686546 bp Feature: domain Description: galliderm_ABC Location: 1 686384-1 686546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), dnaG (TIGR01391), RVT-UG25/RVT-UG1/RVT-UG10(RVT-UNC), galliderm_ABC (TIGR03740)

Seq: KE159610.1 Lachnospiraceae bacterium M18-1 genomic scaffold acPFy-supercont1.3, whole genome shotgun sequence (1121289 bp)
Overview 1 RT 1: 60930-66479 bp 2 RT 2: 88233-99678 bp 3 RT 3: 550663-555973 bp 4 RT 4: 899047-906656 bp Neighborhood of RT #1 [60930, 66538] N6_N4_Mtase TraC-F-type RVT_N RVT-GII GIIM DDE_Tnp_1_6 Neighborhood of RT #2 [88233, 99678] TnpV COG4646 RVT-GII GIIM LPD25 AdoMet_MTases COG4646 Neighborhood of RT #3 [550663, 555984] ECF-ribofla_trS RVT-Retrons MarR PRK05912 Neighborhood of RT #4 [899047, 906703] RVT-GII Intron_maturas2 VirD4 RVT-GII KOG4768 TraG_VirD4 DUF4314 Feature: gene Location: 60930-61721 bp Ori: EOS38082.1 Feature: domain Description: N6_N4_Mtase Location: 61020-61635 bp Feature: domain Description: N6_N4_Mtase Location: 6102 0-61635 bp Feature: gene Location: 62025-63065 bp Ori: EOS38083.1 Feature: domain Description: TraC-F-type Location: 62166-62958 bp Feature: domain Description: TraC-F-type Location: 62 166-62 958 bp Feature: gene Location: 63013-64692 bp Ori: EOS38084.1 Feature: domain Description: RVT_N Location: 63091-63334 bp Feature: domain Description: RVT_N Location: 63091-63334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63379-64039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63379-64039 bp Feature: domain Description: GIIM Note: maturase Location: 64093-64327 bp Feature: domain Description: GIIM Note: maturase Location: 64093-6432 7 bp Feature: gene Location: 64729-64797 bp Feature: gene Location: 65069-66538 bp Ori: EOS37998.1 Feature: domain Description: DDE_Tnp_1_6 Location: 66161-66479 bp Feature: domain Description: DDE_Tnp_1_6 Location: 66161-66479 bp Feature: gene Location: 88233-88607 bp Ori: EOS37953.1 Feature: domain Description: TnpV Location: 88269-88599 bp Feature: domain Description: TnpV Location: 882 69-88599 bp Feature: gene Location: 88663-89652 bp Ori: EOS37954.1 Feature: domain Description: COG4646 Location: 88666-89227 bp Feature: domain Description: COG4646 Location: 88666-892 2 7 bp Feature: gene Location: 89830-91707 bp Ori: EOS37955.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90124-90838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9012 4-90838 bp Feature: domain Description: GIIM Note: maturase Location: 90979-91150 bp Feature: domain Description: GIIM Note: maturase Location: 90979-91150 bp Feature: gene Location: 92411-99205 bp Ori: EOS37956.1 Feature: domain Description: LPD25 Location: 94727-95042 bp Feature: domain Description: LPD2 5 Location: 9472 7-95042 bp Feature: domain Description: AdoMet_MTases Location: 96644-96995 bp Feature: domain Description: AdoMet_MTases Location: 96644-96995 bp Feature: domain Description: COG4646 Location: 97190-99179 bp Feature: domain Description: COG4646 Location: 97190-99179 bp Feature: gene Location: 99220-99678 bp Feature: gene Location: 550663-551283 bp Ori: EOS37585.1 Feature: domain Description: ECF-ribofla_trS Location: 550684-551215 bp Feature: domain Description: ECF-ribofla_trS Location: 550684-5512 15 bp Feature: gene Location: 551444-551671 bp Feature: gene Location: 551643-552734 bp Ori: EOS37587.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 551814-552369 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 551814-552 369 bp Feature: gene Location: 553160-554662 bp Ori: EOS37588.1 Feature: domain Description: MarR Location: 554387-554609 bp Feature: domain Description: MarR Location: 554387-554609 bp Feature: gene Location: 554758-555984 bp Ori: EOS37589.1 Feature: domain Description: PRK05912 Location: 554764-555973 bp Feature: domain Description: PRK05912 Location: 554764-555973 bp Feature: gene Location: 899047-899412 bp Feature: gene Location: 899427-899675 bp Feature: gene Location: 899847-901673 bp Ori: EOS37060.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900117-900951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900117-900951 bp Feature: domain Description: Intron_maturas2 Location: 901059-901314 bp Feature: domain Description: Intron_maturas2 Location: 901059-901314 bp Feature: gene Location: 902278-903177 bp Ori: EOS37061.1 Feature: domain Description: VirD4 Location: 902281-903154 bp Feature: domain Description: VirD4 Location: 902 2 81-903154 bp Feature: gene Location: 903344-905164 bp Ori: EOS37062.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903644-904343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903644-904343 bp Feature: domain Description: KOG4768 Location: 904478-904577 bp Feature: domain Description: KOG4768 Location: 904478-904577 bp Feature: gene Location: 905823-906377 bp Ori: EOS37063.1 Feature: domain Description: TraG_VirD4 Location: 906198-906300 bp Feature: domain Description: TraG_VirD4 Location: 906198-906300 bp Feature: gene Location: 906401-906703 bp Ori: EOS37064.1 Feature: domain Description: DUF4314 Location: 906461-906656 bp Feature: domain Description: DUF4314 Location: 906461-906656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_N4_Mtase (pfam01555), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_6 (pfam13751), TnpV (pfam14198), COG4646 (Adenine-specific DNA methylase, N12 class ), LPD25 (pfam18840), AdoMet_MTases (cl17173)
ECF-ribofla_trS (pfam07155), RVT-Retrons, MarR (pfam01047), PRK05912 (tyrosyl-tRNA synthetase; Validated), Intron_maturas2 (pfam01348), VirD4 (COG3505), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), TraG_VirD4, DUF4314 (pfam14192)

Seq: KE159611.1 Lachnospiraceae bacterium M18-1 genomic scaffold acPFy-supercont1.4, whole genome shotgun sequence (800766 bp)
Overview 1 RT 1: 523516-531030 bp 2 RT 2: 785207-791762 bp Neighborhood of RT #1 [523516, 531030] YesN YesM RVT-GII GIIM RVT-GII KOG1909 Neighborhood of RT #2 [785207, 791773] DUF885 SpmB RVT-GII GIIM RVT-GII MalK RsmI Feature: gene Location: 523516-525060 bp Ori: EOS35801.1 Feature: domain Description: YesN Location: 523528-525055 bp Feature: domain Description: YesN Location: 523 528-525055 bp Feature: gene Location: 525084-526799 bp Ori: EOS35802.1 Feature: domain Description: YesM Location: 525372-526782 bp Feature: domain Description: YesM Location: 5253 72-526782 bp Feature: gene Location: 527074-527637 bp Ori: EOS35803.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527080-527281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527080-527281 bp Feature: domain Description: GIIM Note: maturase Location: 527362-527566 bp Feature: domain Description: GIIM Note: maturase Location: 5273 62-527566 bp Feature: gene Location: 527624-528373 bp Ori: EOS35804.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527879-528272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 527879-528272 bp Feature: gene Location: 529070-529927 bp Ori: EOS35805.1 Feature: domain Description: KOG1909 Location: 529496-529802 bp Feature: domain Description: KOG1909 Location: 529496-529802 bp Feature: gene Location: 529924-531030 bp Feature: gene Location: 785207-787120 bp Ori: EOS35567.1 Feature: domain Description: DUF885 Location: 785528-787100 bp Feature: domain Description: DUF885 Location: 785528-787100 bp Feature: gene Location: 787278-787799 bp Ori: EOS35568.1 Feature: domain Description: SpmB Location: 787317-787788 bp Feature: domain Description: SpmB Location: 7873 17-787788 bp Feature: gene Location: 787926-788489 bp Ori: EOS35569.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787932-788133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78793 2-78813 3 bp Feature: domain Description: GIIM Note: maturase Location: 788214-788418 bp Feature: domain Description: GIIM Note: maturase Location: 788214-788418 bp Feature: gene Location: 788476-789225 bp Ori: EOS35570.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 788731-789124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78873 1-789124 bp Feature: gene Location: 790045-790710 bp Ori: EOS35571.1 Feature: domain Description: MalK Location: 790048-790687 bp Feature: domain Description: MalK Location: 790048-790687 bp Feature: gene Location: 790922-791773 bp Ori: EOS35572.1 Feature: domain Description: RsmI Location: 790925-791762 bp Feature: domain Description: RsmI Location: 790925-791762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), KOG1909 (KOG1909, Ran GTPase-activating protein ), DUF885 (pfam05960), SpmB (COG0700), MalK (COG3839), RsmI (COG0313)

Seq: KE159609.1 Lachnospiraceae bacterium M18-1 genomic scaffold acPFy-supercont1.2, whole genome shotgun sequence (1157219 bp)
Overview 1 RT 1: 283166-289094 bp 2 RT 2: 339858-359394 bp Neighborhood of RT #1 [283166, 289094] PrgI VirB4_CagE VirB4_CagE RVT_N RVT-GII GIIM TraC-F-type Neighborhood of RT #2 [339858, 360008] RVT-GII Intron_maturas2 TraG-D_C RVT-GII HNHc T4SS-DNA_transf DUF3801 HTH_36 SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT_N RVT-GII GIIM ArdC LPD28 YodL LPD28 YodL DUF3849 LPD18 LPD16 NT_KNTase_like Feature: gene Location: 283166-283543 bp Ori: EOS38943.1 Feature: domain Description: PrgI Location: 283184-283448 bp Feature: domain Description: PrgI Location: 283184 -2834 4 8 bp Feature: gene Location: 283521-285362 bp Ori: EOS38944.1 Feature: domain Description: VirB4_CagE Location: 283959-284400 bp Feature: domain Description: VirB4 _CagE Location: 283959-284 4 00 bp Feature: domain Description: VirB4_CagE Location: 284640-285138 bp Feature: domain Description: VirB4 _CagE Location: 284 64 0-285138 bp Feature: gene Location: 285891-287570 bp Ori: EOS38945.1 Feature: domain Description: RVT_N Location: 285969-286212 bp Feature: domain Description: RVT_N Location: 285969-286212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286257-286917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286257-286917 bp Feature: domain Description: GIIM Note: maturase Location: 286971-287205 bp Feature: domain Description: GIIM Note: maturase Location: 286971-287205 bp Feature: gene Location: 287518-288591 bp Ori: EOS38946.1 Feature: domain Description: TraC-F-type Location: 287659-288427 bp Feature: domain Description: TraC-F-type Location: 287659-2884 27 bp Feature: gene Location: 288684-289094 bp Feature: gene Location: 339858-340028 bp Feature: gene Location: 340015-340434 bp Feature: gene Location: 340447-342273 bp Ori: EOS38994.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 340717-341551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 0717-34 1551 bp Feature: domain Description: Intron_maturas2 Location: 341659-341914 bp Feature: domain Description: Intron_maturas2 Location: 34 1659-34 1914 bp Feature: gene Location: 342878-343327 bp Ori: EOS38995.1 Feature: domain Description: TraG-D_C Location: 343055-343304 bp Feature: domain Description: TraG-D_C Location: 34 3055-34 3304 bp Feature: gene Location: 343458-345362 bp Ori: EOS38996.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343773-344505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 3773-34 4 505 bp Feature: domain Description: HNHc Note: nucleases Location: 345084-345252 bp Feature: domain Description: HNHc Note: nucleases Location: 34 5084 -34 5252 bp Feature: gene Location: 346111-347160 bp Ori: EOS38997.1 Feature: domain Description: T4SS-DNA_transf Location: 346519-347137 bp Feature: domain Description: T4 SS-DNA_transf Location: 34 6519-34 7137 bp Feature: gene Location: 347157-347633 bp Ori: EOS38998.1 Feature: domain Description: DUF3801 Location: 347220-347601 bp Feature: domain Description: DUF3801 Location: 34 7220-34 7601 bp Feature: gene Location: 347928-348911 bp Ori: EOS39000.1 Feature: domain Description: HTH_36 Location: 347997-348150 bp Feature: domain Description: HTH_36 Location: 34 7997-34 8150 bp Feature: gene Location: 349236-350879 bp Ori: EOS39001.1 Feature: domain Description: SR_TndX_transposase Location: 349239-349479 bp Feature: domain Description: SR_TndX_transposase Location: 34 9239-34 94 79 bp Feature: domain Description: Recombinase Location: 349584-349959 bp Feature: domain Description: Recombinase Location: 34 9584 -34 9959 bp Feature: domain Description: Zn_ribbon_recom Location: 349998-350190 bp Feature: domain Description: Zn_ribbon_recom Location: 34 9998-350190 bp Feature: domain Description: DUF4368 Location: 350466-350664 bp Feature: domain Description: DUF4 368 Location: 3504 66-350664 bp Feature: gene Location: 351586-353256 bp Ori: EOS39002.1 Feature: domain Description: RVT_N Location: 351631-351874 bp Feature: domain Description: RVT_N Location: 351631-351874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351919-352564 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351919-352564 bp Feature: domain Description: GIIM Note: maturase Location: 352621-352852 bp Feature: domain Description: GIIM Note: maturase Location: 352621-352852 bp Feature: gene Location: 353257-354324 bp Feature: gene Location: 354519-360008 bp Ori: EOS39004.1 Feature: domain Description: ArdC Location: 354729-355317 bp Feature: domain Description: ArdC Location: 354 729-355317 bp Feature: domain Description: LPD28 Location: 356280-356556 bp Feature: domain Description: LPD28 Location: 356280-356556 bp Feature: domain Description: YodL Location: 356658-356955 bp Feature: domain Description: YodL Location: 356658-356955 bp Feature: domain Description: LPD28 Location: 357036-357309 bp Feature: domain Description: LPD28 Location: 357036-357309 bp Feature: domain Description: YodL Location: 357411-357708 bp Feature: domain Description: YodL Location: 3574 11-357708 bp Feature: domain Description: DUF3849 Location: 357780-358149 bp Feature: domain Description: DUF384 9 Location: 357780-35814 9 bp Feature: domain Description: LPD18 Location: 358185-358428 bp Feature: domain Description: LPD18 Location: 358185-3584 28 bp Feature: domain Description: LPD16 Location: 358746-358980 bp Feature: domain Description: LPD16 Location: 35874 6-358980 bp Feature: domain Description: NT_KNTase_like Location: 359205-359394 bp Feature: domain Description: NT_KNTase_like Location: 359205-359394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraC-F-type (TIGR02746), Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), HNHc (smart00507), T4SS-DNA_transf (pfam02534)
DUF3801 (pfam12687), HTH_36 (pfam13730), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), ArdC (COG4227), LPD28 (pfam18843), YodL (pfam14191), DUF3849 (pfam12960)
LPD18 (pfam18832), LPD16 (pfam18830), NT_KNTase_like (cd05403)