myRT

myRT report for GCA_000403335.2_Lach_bact_COE1_V1

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Seq: KE159629.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.3, whole genome shotgun sequence (950646 bp)
Overview 1 RT 1: 340786-343392 bp Neighborhood of RT #1 [340786, 343392] Avd_like RVT-DGRs XhlA Feature: gene Location: 340786-341211 bp Feature: domain Description: Avd_like Location: 340873-341182 bp Feature: domain Description: Avd_like Location: 340873-341 1 82 bp Feature: gene Location: 341118-341336 bp Feature: gene Location: 341612-342736 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 341849-342578 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 341 849-342578 bp Feature: gene Location: 342791-343057 bp Feature: domain Description: XhlA Location: 342818-343022 bp Feature: domain Description: XhlA Location: 34281 8-343022 bp Feature: gene Location: 343075-343392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XhlA (pfam10779)

Seq: KE159617.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.1, whole genome shotgun sequence (1322351 bp)
Overview 1 RT 1: 201864-206776 bp 2 RT 2: 256780-261730 bp Neighborhood of RT #1 [201864, 206776] RVT_N RVT-GII GIIM Neighborhood of RT #2 [256780, 261738] HTH_3 FliG_C ParB_N_like RVT-GII TraG-D_C TnpV Feature: gene Location: 201864-202034 bp Feature: gene Location: 202024-202278 bp Feature: gene Location: 202250-203923 bp Feature: RT Description: RVT_N Location: 202295-202538 bp Feature: RT Description: RVT_N Location: 2 02 2 95-2 02 538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202583-203231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 583-2 032 31 bp Feature: domain Description: GIIM Note: maturase Location: 203285-203516 bp Feature: domain Description: GIIM Note: maturase Location: 2 032 85-2 03516 bp Feature: gene Location: 203924-205066 bp Feature: gene Location: 205211-206776 bp Feature: gene Location: 256780-257262 bp Feature: domain Description: HTH_3 Location: 256810-256969 bp Feature: domain Description: HTH_3 Location: 2 56810-2 56969 bp Feature: domain Description: FliG_C Location: 256996-257233 bp Feature: domain Description: FliG_C Location: 2 56996-2 572 33 bp Feature: gene Location: 257517-258359 bp Feature: domain Description: ParB_N_like Location: 257640-257892 bp Feature: domain Description: ParB_N_like Location: 2 57640-2 57892 bp Feature: gene Location: 258325-260232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258655-259399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 58655-2 59399 bp Feature: gene Location: 260456-261325 bp Feature: domain Description: TraG-D_C Location: 260846-261149 bp Feature: domain Description: TraG-D_C Location: 2 60846-2 61149 bp Feature: gene Location: 261361-261738 bp Feature: domain Description: TnpV Location: 261406-261730 bp Feature: domain Description: TnpV Location: 2 61406-2 61730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_3 (pfam01381), FliG_C (pfam01706), ParB_N_like (cd16411), TraG-D_C (pfam12696), TnpV (pfam14198)

Seq: KE159618.1 Lachnospiraceae bacterium COE1 genomic scaffold acPFN-supercont1.10, whole genome shotgun sequence (24787 bp)
Overview 1 RT 1: 254-4151 bp Neighborhood of RT #1 [254, 4168] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM HTH_17 Dcm Feature: gene Location: 254-694 bp Feature: domain Description: DDE_Tnp_IS66 Location: 263-497 bp Feature: domain Description: DDE_Tnp_IS66 Location: 263 -497 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 518-641 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 518-641 bp Feature: gene Location: 765-1721 bp Feature: gene Location: 1995-2762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2019-2304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2019-23 04 bp Feature: domain Description: GIIM Note: maturase Location: 2364-2589 bp Feature: domain Description: GIIM Note: maturase Location: 23 64-2589 bp Feature: gene Location: 2935-3117 bp Feature: domain Description: HTH_17 Location: 2944-3067 bp Feature: domain Description: HTH_17 Location: 2944-3 067 bp Feature: gene Location: 3080-4168 bp Feature: domain Description: Dcm Location: 3119-4151 bp Feature: domain Description: Dcm Location: 3 119-4151 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Dcm (COG0270)