myRT

myRT report for GCA_000403435.2_Osci_bact_1-3_V1

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Seq: KE159703.1 Oscillibacter sp. 1-3 genomic scaffold acPPL-supercont1.1, whole genome shotgun sequence (1299072 bp)
Overview 1 RT 1: 478395-484637 bp 2 RT 2: 603413-611558 bp Neighborhood of RT #1 [478395, 484699] DnaG DUF3991 Toprim_2 RVT-GII VirD4 HTH_36 Neighborhood of RT #2 [603413, 611809] TrbC T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc TraG-D_C RVT-GII HNHc VirD4 Pentapeptide_4 Feature: gene Location: 478395-479858 bp Feature: domain Description: DnaG Location: 478593-478731 bp Feature: domain Description: DnaG Location: 478593-478731 bp Feature: domain Description: DUF3991 Location: 478776-479022 bp Feature: domain Description: DUF3991 Location: 478776-479022 bp Feature: domain Description: Toprim_2 Location: 479040-479313 bp Feature: domain Description: Toprim_2 Location: 479040-47931 3 bp Feature: gene Location: 479863-480189 bp Feature: gene Location: 480903-482819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481221-481926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 221 -481 926 bp Feature: gene Location: 482915-484441 bp Feature: domain Description: VirD4 Location: 482921-484160 bp Feature: domain Description: VirD4 Location: 482921 -4841 60 bp Feature: gene Location: 484445-484699 bp Feature: domain Description: HTH_36 Location: 484478-484637 bp Feature: domain Description: HTH_36 Location: 484478-484637 bp Feature: gene Location: 603413-603748 bp Feature: domain Description: TrbC Location: 603446-603737 bp Feature: domain Description: TrbC Location: 603446-603737 bp Feature: gene Location: 603732-604202 bp Feature: domain Description: T4SS-DNA_transf Location: 603834-604032 bp Feature: domain Description: T4SS-DNA_transf Location: 603834-604032 bp Feature: gene Location: 604216-606033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604480-605314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604480-60531 4 bp Feature: domain Description: Intron_maturas2 Location: 605446-605689 bp Feature: domain Description: Intron_maturas2 Location: 605446-605689 bp Feature: domain Description: HNHc Note: nucleases Location: 605860-606010 bp Feature: domain Description: HNHc Note: nucleases Location: 605860-60601 0 bp Feature: gene Location: 606629-607255 bp Feature: domain Description: TraG-D_C Location: 607031-607244 bp Feature: domain Description: TraG-D_C Location: 607031 -607244 bp Feature: gene Location: 607507-609414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607846-608593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 607846-608593 bp Feature: domain Description: HNHc Note: nucleases Location: 609160-609298 bp Feature: domain Description: HNHc Note: nucleases Location: 6091 60-609298 bp Feature: gene Location: 610121-610885 bp Feature: domain Description: VirD4 Location: 610370-610841 bp Feature: domain Description: VirD4 Location: 61 0370-61 0841 bp Feature: gene Location: 610895-611809 bp Feature: domain Description: Pentapeptide_4 Location: 611351-611558 bp Feature: domain Description: Pentapeptide_4 Location: 61 1 351 -61 1 558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaG (COG0358), DUF3991 (pfam13154), Toprim_2 (pfam13155), RVT-GII, VirD4 (COG3505), HTH_36 (pfam13730), TrbC (pfam04956), T4SS-DNA_transf (pfam02534), Intron_maturas2 (pfam01348), HNHc (smart00507)
TraG-D_C (pfam12696), Pentapeptide_4 (pfam13599)

Seq: KE159710.1 Oscillibacter sp. 1-3 genomic scaffold acPPL-supercont1.5, whole genome shotgun sequence (511196 bp)
Overview 1 RT 1: 416923-422901 bp 2 RT 2: 429972-433749 bp 3 RT 3: 440040-446886 bp Neighborhood of RT #1 [416923, 422901] geopep_mat_rSAM Dcm RVT-GII HNHc DUF4406 Neighborhood of RT #2 [429972, 433749] Adenine_glyco TraC-F-type RVT-GII Intron_maturas2 Neighborhood of RT #3 [440040, 447035] trimeric_dUTPase deoxycytidylate_deaminase RVT-DGRs HTH_23 PHA02517 M20_ACY1L2-like Feature: gene Location: 416923-418164 bp Feature: domain Description: geopep_mat_rSAM Location: 416980-418096 bp Feature: domain Description: geopep_mat_rSAM Location: 416980-418096 bp Feature: gene Location: 418681-418977 bp Feature: domain Description: Dcm Location: 418708-418903 bp Feature: domain Description: Dcm Location: 418708-418903 bp Feature: gene Location: 419100-420872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419349-420054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419349-42 0054 bp Feature: domain Description: HNHc Note: nucleases Location: 420687-420753 bp Feature: domain Description: HNHc Note: nucleases Location: 42 0687-42 0753 bp Feature: gene Location: 421655-422020 bp Feature: domain Description: DUF4406 Location: 421676-421955 bp Feature: domain Description: DUF4406 Location: 42 1676-42 1955 bp Feature: gene Location: 422035-422901 bp Feature: gene Location: 429972-430544 bp Feature: domain Description: Adenine_glyco Location: 429999-430521 bp Feature: domain Description: Adenine_glyco Location: 42 9999-43052 1 bp Feature: gene Location: 430555-430953 bp Feature: domain Description: TraC-F-type Location: 430600-430828 bp Feature: domain Description: TraC-F-type Location: 430600-43082 8 bp Feature: gene Location: 431030-432841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431294-432128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4312 94-432 12 8 bp Feature: domain Description: Intron_maturas2 Location: 432197-432506 bp Feature: domain Description: Intron_maturas2 Location: 432 197-432 506 bp Feature: gene Location: 433261-433479 bp Feature: gene Location: 433486-433749 bp Feature: gene Location: 440040-440954 bp Feature: domain Description: trimeric_dUTPase Location: 440145-440445 bp Feature: domain Description: trimeric_dUTPase Location: 440145-440445 bp Feature: gene Location: 440982-443315 bp Feature: domain Description: deoxycytidylate_deaminase Location: 442644-443160 bp Feature: domain Description: deoxycytidylate_deaminase Location: 442 644-443160 bp Feature: gene Location: 443688-444347 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 443814-444243 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 443814-4442 43 bp Feature: gene Location: 444495-445157 bp Feature: domain Description: HTH_23 Location: 444525-444630 bp Feature: domain Description: HTH_2 3 Location: 44452 5-444630 bp Feature: domain Description: PHA02517 Location: 444831-445152 bp Feature: domain Description: PHA02 517 Location: 444831-445152 bp Feature: gene Location: 445788-447035 bp Feature: domain Description: M20_ACY1L2-like Location: 445818-446886 bp Feature: domain Description: M2 0_ACY1L2 -like Location: 445818-446886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT geopep_mat_rSAM (TIGR04280), Dcm (COG0270), RVT-GII, HNHc (smart00507), DUF4406 (pfam14359), Adenine_glyco (pfam03352), TraC-F-type (TIGR02746), Intron_maturas2 (pfam01348), trimeric_dUTPase (cl00493), deoxycytidylate_deaminase (cd01286)
RVT-DGRs, HTH_23 (pfam13384), PHA02517 (putative transposase OrfB; Reviewed), M20_ACY1L2-like (cd05672)

Seq: KE159707.1 Oscillibacter sp. 1-3 genomic scaffold acPPL-supercont1.2, whole genome shotgun sequence (813494 bp)
Overview 1 RT 1: 71859-76812 bp Neighborhood of RT #1 [71859, 76973] RVT-GII Intron_maturas2 HNHc VirD4 Feature: gene Location: 71859-72329 bp Feature: gene Location: 72348-72569 bp Feature: gene Location: 72624-74465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72909-73731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72909-73 73 1 bp Feature: domain Description: Intron_maturas2 Location: 73803-74088 bp Feature: domain Description: Intron_maturas2 Location: 73 803 -74088 bp Feature: domain Description: HNHc Note: nucleases Location: 74289-74436 bp Feature: domain Description: HNHc Note: nucleases Location: 74289-7443 6 bp Feature: gene Location: 75047-75238 bp Feature: gene Location: 75192-76973 bp Feature: domain Description: VirD4 Location: 75423-76812 bp Feature: domain Description: VirD4 Location: 75423 -76812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505)

Seq: KE159709.1 Oscillibacter sp. 1-3 genomic scaffold acPPL-supercont1.4, whole genome shotgun sequence (670186 bp)
Overview 1 RT 1: 351663-356008 bp Neighborhood of RT #1 [351663, 356008] Avd_like RVT-DGRs Feature: gene Location: 351663-351935 bp Feature: gene Location: 351890-352318 bp Feature: domain Description: Avd_like Location: 351935-352271 bp Feature: domain Description: Avd_like Location: 351935-352271 bp Feature: gene Location: 352687-353805 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 352888-353581 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 352888-353581 bp Feature: gene Location: 353805-355523 bp Feature: gene Location: 355520-356008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: KE159708.1 Oscillibacter sp. 1-3 genomic scaffold acPPL-supercont1.3, whole genome shotgun sequence (490975 bp)
Overview 1 RT 1: 130727-139584 bp Neighborhood of RT #1 [130727, 139607] zf-HC2 RpoE RVT-Retrons Flg_new SLH SLH prfB Feature: gene Location: 130727-131620 bp Feature: domain Description: zf-HC2 Location: 130745-130844 bp Feature: domain Description: zf-HC2 Location: 130745 -130844 bp Feature: gene Location: 131607-132086 bp Feature: domain Description: RpoE Location: 131613-132075 bp Feature: domain Description: RpoE Location: 131613-132075 bp Feature: gene Location: 132401-133321 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132512-133064 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1325 12-133064 bp Feature: gene Location: 133537-137682 bp Feature: domain Description: Flg_new Location: 134359-134521 bp Feature: domain Description: Flg_new Location: 13435 9-1345 21 bp Feature: domain Description: SLH Location: 137194-137314 bp Feature: domain Description: SLH Location: 137194-137314 bp Feature: domain Description: SLH Location: 137527-137644 bp Feature: domain Description: SLH Location: 1375 27-137644 bp Feature: gene Location: 138483-139607 bp Feature: domain Description: prfB Location: 138507-139584 bp Feature: domain Description: prfB Location: 1385 07-1395 84 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-HC2 (pfam13490), RpoE (COG3343), RVT-Retrons, Flg_new (pfam09479), SLH (pfam00395), prfB (TIGR00020)