myRT

myRT report for GCA_000403475.2_Lach_bact_3-2_V1

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Seq: KE159796.1 Lachnospiraceae bacterium 3-2 genomic scaffold acPFJ-supercont1.2, whole genome shotgun sequence (1097983 bp)
Overview 1 RT 1: 342823-348769 bp Neighborhood of RT #1 [342823, 348769] PrgI TraC-F-type RVT_N RVT-GII GIIM VirB4_CagE Feature: gene Location: 342823-343230 bp Feature: domain Description: PrgI Location: 342838-343105 bp Feature: domain Description: PrgI Location: 342838-3431 05 bp Feature: gene Location: 343312-344790 bp Feature: domain Description: TraC-F-type Location: 344179-344758 bp Feature: domain Description: TraC-F-type Location: 3441 79-344758 bp Feature: gene Location: 345319-346998 bp Feature: RT Description: RVT_N Location: 345397-345640 bp Feature: RT Description: RVT_N Location: 345397-345640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345694-346345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345694-346345 bp Feature: domain Description: GIIM Note: maturase Location: 346399-346633 bp Feature: domain Description: GIIM Note: maturase Location: 346399-346633 bp Feature: gene Location: 347003-348019 bp Feature: domain Description: VirB4_CagE Location: 347087-347894 bp Feature: domain Description: VirB4_CagE Location: 347087-347894 bp Feature: gene Location: 348101-348769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirB4_CagE (TIGR00929)

Seq: KE159798.1 Lachnospiraceae bacterium 3-2 genomic scaffold acPFJ-supercont1.4, whole genome shotgun sequence (362008 bp)
Overview 1 RT 1: 351606-358133 bp Neighborhood of RT #1 [351606, 358181] PrgI VirB4_CagE VirB4_CagE AAA_10 RVT_N RVT-GII GIIM VirB4 Transposase_31 Feature: gene Location: 351606-351980 bp Feature: domain Description: PrgI Location: 351618-351885 bp Feature: domain Description: PrgI Location: 351618-351885 bp Feature: gene Location: 351964-353412 bp Feature: domain Description: VirB4_CagE Location: 352024-352438 bp Feature: domain Description: VirB4_CagE Location: 352 02 4-352 438 bp Feature: domain Description: VirB4_CagE Location: 352597-353179 bp Feature: domain Description: VirB4_CagE Location: 352 597-353179 bp Feature: domain Description: AAA_10 Location: 353272-353401 bp Feature: domain Description: AAA_10 Location: 3532 72 -353401 bp Feature: gene Location: 353941-355620 bp Feature: RT Description: RVT_N Location: 354019-354262 bp Feature: RT Description: RVT_N Location: 354019-3542 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354316-354967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354316-354967 bp Feature: domain Description: GIIM Note: maturase Location: 355021-355255 bp Feature: domain Description: GIIM Note: maturase Location: 35502 1-3552 55 bp Feature: gene Location: 355625-356614 bp Feature: domain Description: VirB4 Location: 355706-356474 bp Feature: domain Description: VirB4 Location: 355706-356474 bp Feature: gene Location: 357509-358181 bp Feature: domain Description: Transposase_31 Location: 357842-358133 bp Feature: domain Description: Transposase_31 Location: 357842 -358133 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), VirB4_CagE (TIGR00929), AAA_10 (pfam12846), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirB4 (COG3451), Transposase_31 (pfam04754)

Seq: KE159797.1 Lachnospiraceae bacterium 3-2 genomic scaffold acPFJ-supercont1.3, whole genome shotgun sequence (613283 bp)
Overview 1 RT 1: 592271-600093 bp Neighborhood of RT #1 [592271, 600209] NlpD Spr TraC-F-type RVT_N RVT-GII GIIM TraC-F-type PrgI Feature: gene Location: 592271-595042 bp Feature: domain Description: NlpD Location: 594149-594575 bp Feature: domain Description: NlpD Location: 594149-594575 bp Feature: domain Description: Spr Location: 594665-595019 bp Feature: domain Description: Spr Location: 594665-595019 bp Feature: gene Location: 595042-596088 bp Feature: domain Description: TraC-F-type Location: 595126-595891 bp Feature: domain Description: TraC-F-type Location: 595126-595891 bp Feature: gene Location: 596093-597772 bp Feature: RT Description: RVT_N Location: 596171-596414 bp Feature: RT Description: RVT_N Location: 596171-596414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596468-597119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596468-597119 bp Feature: domain Description: GIIM Note: maturase Location: 597173-597407 bp Feature: domain Description: GIIM Note: maturase Location: 597173 -597407 bp Feature: gene Location: 598301-599854 bp Feature: domain Description: TraC-F-type Location: 599180-599783 bp Feature: domain Description: TraC-F-type Location: 599180-599783 bp Feature: gene Location: 599802-600209 bp Feature: domain Description: PrgI Location: 599820-600093 bp Feature: domain Description: PrgI Location: 599820-600093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NlpD (COG0739), Spr (COG0791), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PrgI (pfam12666)

Seq: KE159795.1 Lachnospiraceae bacterium 3-2 genomic scaffold acPFJ-supercont1.1, whole genome shotgun sequence (2382349 bp)
Overview 1 RT 1: 219509-224968 bp 2 RT 2: 255425-259122 bp 3 RT 3: 378104-383594 bp 4 RT 4: 626556-631259 bp 5 RT 5: 1733319-1738873 bp Neighborhood of RT #1 [219509, 224985] LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM T_den_put_tspse release_prfH Neighborhood of RT #2 [255425, 259122] RVT-GII GIIM T_den_put_tspse Neighborhood of RT #3 [378104, 383594] MacB_PCD SalY YbbP MacB_PCD SalY RVT-GII GIIM Neighborhood of RT #4 [626556, 631259] COG3464 HTH_LUXR HTH_LUXR COG3464 RVT-GII GIIM PDDEXK_2 Neighborhood of RT #5 [1733319, 1738902] AraH MglA RVT-GII GIIM DUF3791 DUF3990 Feature: gene Location: 219509-221131 bp Feature: domain Description: LZ_Tnp_IS66 Location: 219632-219866 bp Feature: domain Description: LZ_Tnp_IS66 Location: 219632-219866 bp Feature: domain Description: DDE_Tnp_IS66 Location: 220067-220934 bp Feature: domain Description: DDE_Tnp_IS66 Location: 220067-220934 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 220955-221078 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 220955-221078 bp Feature: gene Location: 221472-221732 bp Feature: gene Location: 221864-223180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222125-222818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222125-222818 bp Feature: domain Description: GIIM Note: maturase Location: 222902-223106 bp Feature: domain Description: GIIM Note: maturase Location: 222902-223106 bp Feature: gene Location: 223712-224233 bp Feature: domain Description: T_den_put_tspse Location: 223784-224183 bp Feature: domain Description: T_den_put_tspse Location: 223784 -224 183 bp Feature: gene Location: 224392-224985 bp Feature: domain Description: release_prfH Location: 224395-224968 bp Feature: domain Description: release_prfH Location: 224 395-224 968 bp Feature: gene Location: 255425-255598 bp Feature: gene Location: 255653-255835 bp Feature: gene Location: 256066-257382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256327-257020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 256327-257020 bp Feature: domain Description: GIIM Note: maturase Location: 257104-257308 bp Feature: domain Description: GIIM Note: maturase Location: 257104 -257308 bp Feature: gene Location: 257914-258438 bp Feature: domain Description: T_den_put_tspse Location: 257989-258388 bp Feature: domain Description: T_den_put_tspse Location: 257989-258388 bp Feature: gene Location: 258469-259122 bp Feature: gene Location: 378104-380746 bp Feature: domain Description: MacB_PCD Location: 378281-378704 bp Feature: domain Description: MacB_PCD Location: 378281-378704 bp Feature: domain Description: SalY Location: 379004-379388 bp Feature: domain Description: SalY Location: 379004 -379388 bp Feature: domain Description: YbbP Location: 379424-379538 bp Feature: domain Description: YbbP Location: 3794 24 -379538 bp Feature: domain Description: MacB_PCD Location: 379823-380114 bp Feature: domain Description: MacB_PCD Location: 379823-380114 bp Feature: domain Description: SalY Location: 380222-380678 bp Feature: domain Description: SalY Location: 380222-380678 bp Feature: gene Location: 380846-381100 bp Feature: gene Location: 381232-382548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381493-382186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3814 93-382186 bp Feature: domain Description: GIIM Note: maturase Location: 382270-382474 bp Feature: domain Description: GIIM Note: maturase Location: 382270-3824 74 bp Feature: gene Location: 383080-383277 bp Feature: gene Location: 383277-383594 bp Feature: gene Location: 626556-626924 bp Feature: gene Location: 626991-628355 bp Feature: domain Description: COG3464 Location: 627048-627375 bp Feature: domain Description: COG34 64 Location: 62704 8-627375 bp Feature: domain Description: HTH_LUXR Location: 627456-627522 bp Feature: domain Description: HTH_LUXR Location: 6274 56-627522 bp Feature: domain Description: HTH_LUXR Location: 627630-627705 bp Feature: domain Description: HTH_LUXR Location: 627630-627705 bp Feature: domain Description: COG3464 Location: 627873-628329 bp Feature: domain Description: COG34 64 Location: 627873-628329 bp Feature: gene Location: 628553-629869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628814-629507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628814 -629507 bp Feature: domain Description: GIIM Note: maturase Location: 629591-629795 bp Feature: domain Description: GIIM Note: maturase Location: 629591-629795 bp Feature: gene Location: 630401-630931 bp Feature: domain Description: PDDEXK_2 Location: 630524-630905 bp Feature: domain Description: PDDEXK_2 Location: 630524 -630905 bp Feature: gene Location: 631032-631259 bp Feature: gene Location: 1733319-1734266 bp Feature: domain Description: AraH Location: 1733349-1734261 bp Feature: domain Description: AraH Location: 173334 9-1734 261 bp Feature: gene Location: 1734270-1735772 bp Feature: domain Description: MglA Location: 1734276-1735749 bp Feature: domain Description: MglA Location: 1734 276-173574 9 bp Feature: gene Location: 1736124-1737422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1736379-1737069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1736379-1737069 bp Feature: domain Description: GIIM Note: maturase Location: 1737150-1737345 bp Feature: domain Description: GIIM Note: maturase Location: 1737150-173734 5 bp Feature: gene Location: 1737974-1738213 bp Feature: gene Location: 1738210-1738902 bp Feature: domain Description: DUF3791 Location: 1738246-1738405 bp Feature: domain Description: DUF3791 Location: 173824 6-17384 05 bp Feature: domain Description: DUF3990 Location: 1738426-1738873 bp Feature: domain Description: DUF3990 Location: 17384 26-1738873 bp Sorry, your browser 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Associated domains:myRT LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), T_den_put_tspse (TIGR01784), release_prfH (TIGR03072), MacB_PCD (pfam12704), SalY (COG0577), YbbP (COG3127)
COG3464 (Transposase ), HTH_LUXR (smart00421), PDDEXK_2 (pfam12784), AraH (COG1172), MglA (COG1129), DUF3791 (pfam12668), DUF3990 (pfam13151)