myRT

myRT report for GCA_000403825.2_Para_gold_dnLKV18_V1

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Seq: KE159513.1 Parabacteroides goldsteinii dnLKV18 genomic scaffold acPFM-supercont1.1, whole genome shotgun sequence (2403023 bp)
Overview 1 RT 1: 829475-834260 bp 2 RT 2: 964214-968137 bp 3 RT 3: 1715404-1721750 bp 4 RT 4: 2096480-2107046 bp Neighborhood of RT #1 [829475, 834260] ABC_ABC_ChvD Arm-DNA-bind_5 Phage_int_SAM_5 RVT-GII Intron_maturas2 INTN1_C_like Neighborhood of RT #2 [964214, 968178] RVT_N RVT-GII GIIM DUF4134 DUF4133 Neighborhood of RT #3 [1715404, 1721776] DUF4134 RVT_N RVT-GII GIIM DUF4134 Bac_Flav_CT_G Neighborhood of RT #4 [2096480, 2107057] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 Bac_Flav_CT_J Feature: gene Location: 829475-831163 bp Feature: domain Description: ABC_ABC_ChvD Location: 829493-831152 bp Feature: domain Description: ABC_ABC_ChvD Location: 829493-831 1 52 bp Feature: gene Location: 831845-832411 bp Feature: domain Description: Arm-DNA-bind_5 Location: 831878-832130 bp Feature: domain Description: Arm-DNA-bind_5 Location: 831 878-8321 30 bp Feature: domain Description: Phage_int_SAM_5 Location: 832169-832400 bp Feature: domain Description: Phage_int_SAM_5 Location: 8321 69-832400 bp Feature: gene Location: 832408-833718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832411-832984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83241 1 -832984 bp Feature: domain Description: Intron_maturas2 Location: 833059-833365 bp Feature: domain Description: Intron_maturas2 Location: 833059-833365 bp Feature: gene Location: 833708-833962 bp Feature: domain Description: INTN1_C_like Location: 833828-833906 bp Feature: domain Description: INTN1 _C_like Location: 833828-833906 bp Feature: gene Location: 834078-834260 bp Feature: gene Location: 964214-964954 bp Feature: gene Location: 965061-965336 bp Feature: gene Location: 965937-967592 bp Feature: RT Description: RVT_N Location: 965994-966231 bp Feature: RT Description: RVT_N Location: 965994-966231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966282-966930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 966282-966930 bp Feature: domain Description: GIIM Note: maturase Location: 966987-967218 bp Feature: domain Description: GIIM Note: maturase Location: 966987-96721 8 bp Feature: gene Location: 967589-967831 bp Feature: domain Description: DUF4134 Location: 967736-967826 bp Feature: domain Description: DUF41 34 Location: 967736-967826 bp Feature: gene Location: 967855-968178 bp Feature: domain Description: DUF4133 Location: 967870-968137 bp Feature: domain Description: DUF41 33 Location: 967870-9681 37 bp Feature: gene Location: 1715404-1716030 bp Feature: gene Location: 1716195-1716410 bp Feature: domain Description: DUF4134 Location: 1716213-1716396 bp Feature: domain Description: DUF41 34 Location: 1 71 621 3-1 71 6396 bp Feature: gene Location: 1717026-1718681 bp Feature: RT Description: RVT_N Location: 1717083-1717320 bp Feature: RT Description: RVT_N Location: 1 71 7083-1 71 7320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1717371-1718019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 7371 -1 71 801 9 bp Feature: domain Description: GIIM Note: maturase Location: 1718076-1718307 bp Feature: domain Description: GIIM Note: maturase Location: 1 71 8076-1 71 8307 bp Feature: gene Location: 1718678-1718920 bp Feature: domain Description: DUF4134 Location: 1718825-1718915 bp Feature: domain Description: DUF41 34 Location: 1 71 8825-1 71 891 5 bp Feature: gene Location: 1719080-1721776 bp Feature: domain Description: Bac_Flav_CT_G Location: 1719266-1721750 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 71 9266-1 721 750 bp Feature: gene Location: 2096480-2097151 bp Feature: gene Location: 2097316-2097531 bp Feature: domain Description: DUF4134 Location: 2097337-2097517 bp Feature: domain Description: DUF41 34 Location: 2097337-209751 7 bp Feature: gene Location: 2098147-2099802 bp Feature: RT Description: RVT_N Location: 2098204-2098441 bp Feature: RT Description: RVT_N Location: 2098204-2098441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2098492-2099140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2098492-20991 40 bp Feature: domain Description: GIIM Note: maturase Location: 2099197-2099428 bp Feature: domain Description: GIIM Note: maturase Location: 20991 97-2099428 bp Feature: gene Location: 2099799-2100041 bp Feature: domain Description: DUF4134 Location: 2099946-2100036 bp Feature: domain Description: DUF41 34 Location: 2099946-21 00036 bp Feature: gene Location: 2100052-2100387 bp Feature: domain Description: DUF4133 Location: 2100070-2100337 bp Feature: domain Description: DUF41 33 Location: 21 00070-21 00337 bp Feature: gene Location: 2100384-2102780 bp Feature: domain Description: Bac_Flav_CT_G Location: 2100387-2102772 bp Feature: domain Description: Bac_Flav_CT_G Location: 21 00387-21 02772 bp Feature: gene Location: 2103349-2105172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2103613-2104435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 0361 3-21 04435 bp Feature: domain Description: Intron_maturas2 Location: 2104609-2104852 bp Feature: domain Description: Intron_maturas2 Location: 21 04609-21 04852 bp Feature: domain Description: HNHc Note: nucleases Location: 2104963-2105134 bp Feature: domain Description: HNHc Note: nucleases Location: 21 04963-21 051 34 bp Feature: gene Location: 2105416-2106042 bp Feature: domain Description: DUF4141 Location: 2105428-2105581 bp Feature: domain Description: DUF41 41 Location: 21 05428-21 05581 bp Feature: gene Location: 2106062-2107057 bp Feature: domain Description: Bac_Flav_CT_J Location: 2106083-2107046 bp Feature: domain Description: Bac_Flav_CT_J Location: 21 06083-21 07046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_ABC_ChvD (TIGR03719), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), RVT-GII, Intron_maturas2 (pfam01348), INTN1_C_like (cd01185), RVT_N (pfam13655), GIIM (pfam08388), DUF4134 (pfam13572), DUF4133 (pfam13571)
Bac_Flav_CT_G (TIGR03783), HNHc (smart00507), DUF4141 (pfam13605), Bac_Flav_CT_J (TIGR03782)

Seq: KE159523.1 Parabacteroides goldsteinii dnLKV18 genomic scaffold acPFM-supercont1.6, whole genome shotgun sequence (311152 bp)
Overview 1 RT 1: 211719-218277 bp 2 RT 2: 300970-307696 bp Neighborhood of RT #1 [211719, 218277] DUF2075 RVT-GII Intron_maturas2 HNHc DUF2075 Neighborhood of RT #2 [300970, 307707] COG4584 PRK09183 RVT-GII Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like thiL Feature: gene Location: 211719-213521 bp Feature: domain Description: DUF2075 Location: 212157-213477 bp Feature: domain Description: DUF2 075 Location: 2 12 157-2 13477 bp Feature: gene Location: 213528-214097 bp Feature: gene Location: 214666-216489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214930-215752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 14930-2 15752 bp Feature: domain Description: Intron_maturas2 Location: 215926-216169 bp Feature: domain Description: Intron_maturas2 Location: 2 1592 6-2 16169 bp Feature: domain Description: HNHc Note: nucleases Location: 216280-216451 bp Feature: domain Description: HNHc Note: nucleases Location: 2 162 80-2 16451 bp Feature: gene Location: 216668-217936 bp Feature: domain Description: DUF2075 Location: 216833-217889 bp Feature: domain Description: DUF2 075 Location: 2 16833-2 17889 bp Feature: gene Location: 218008-218277 bp Feature: gene Location: 300970-302502 bp Feature: domain Description: COG4584 Location: 301291-301846 bp Feature: domain Description: COG4584 Location: 3012 91-301846 bp Feature: gene Location: 302499-303290 bp Feature: domain Description: PRK09183 Location: 302514-303231 bp Feature: domain Description: PRK09183 Location: 302 514-3032 31 bp Feature: gene Location: 303387-304730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303651-304473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303651-304473 bp Feature: gene Location: 305273-306289 bp Feature: domain Description: Arm-DNA-bind_5 Location: 305303-305552 bp Feature: domain Description: Arm-DNA-bind_5 Location: 305303-305552 bp Feature: domain Description: Phage_int_SAM_5 Location: 305600-305909 bp Feature: domain Description: Phage_int_SAM_5 Location: 305600-305909 bp Feature: domain Description: INTN1_C_like Location: 305960-306266 bp Feature: domain Description: INTN1_C_like Location: 305960-3062 66 bp Feature: gene Location: 306676-307707 bp Feature: domain Description: thiL Location: 306709-307696 bp Feature: domain Description: thiL Location: 306709-307696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2075 (pfam09848), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), thiL (TIGR01379)

Seq: KE159519.1 Parabacteroides goldsteinii dnLKV18 genomic scaffold acPFM-supercont1.2, whole genome shotgun sequence (1662278 bp)
Overview 1 RT 1: 682568-691912 bp 2 RT 2: 742914-751166 bp 3 RT 3: 1418849-1432372 bp Neighborhood of RT #1 [682568, 691914] Bac_Flav_CT_J RVT_N RVT-GII GIIM DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Neighborhood of RT #2 [742914, 751228] SusD OMP_RagA_SusC RVT_N RVT-GII GIIM OMP_RagA_SusC Metallophos_2 Neighborhood of RT #3 [1418849, 1432372] Bac_Flav_CT_J RVT_N RVT-GII GIIM DUF4141 DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 682568-683581 bp Feature: domain Description: Bac_Flav_CT_J Location: 682589-683552 bp Feature: domain Description: Bac_Flav_CT_J Location: 682589-683 552 bp Feature: gene Location: 683610-684152 bp Feature: gene Location: 684136-685818 bp Feature: RT Description: RVT_N Location: 684190-684433 bp Feature: RT Description: RVT_N Location: 684190-68443 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684478-685132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684478-68513 2 bp Feature: domain Description: GIIM Note: maturase Location: 685186-685417 bp Feature: domain Description: GIIM Note: maturase Location: 685186-685417 bp Feature: gene Location: 686496-686621 bp Feature: domain Description: DUF4141 Location: 686502-686619 bp Feature: domain Description: DUF4141 Location: 686502-686619 bp Feature: gene Location: 686659-686934 bp Feature: gene Location: 686935-687066 bp Feature: gene Location: 687312-689135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 687576-688398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 687576-6883 98 bp Feature: domain Description: Intron_maturas2 Location: 688572-688815 bp Feature: domain Description: Intron_maturas2 Location: 688572-688815 bp Feature: domain Description: HNHc Note: nucleases Location: 688926-689097 bp Feature: domain Description: HNHc Note: nucleases Location: 688926-689097 bp Feature: gene Location: 689704-690054 bp Feature: domain Description: Bac_Flav_CT_G Location: 689707-690046 bp Feature: domain Description: Bac_Flav_CT_G Location: 689707-690046 bp Feature: gene Location: 690076-691914 bp Feature: domain Description: Bac_Flav_CT_G Location: 690079-691912 bp Feature: domain Description: Bac_Flav_CT_G Location: 690079-691912 bp Feature: gene Location: 742914-744425 bp Feature: domain Description: SusD Location: 743091-744249 bp Feature: domain Description: SusD Location: 743 091-744249 bp Feature: gene Location: 744438-744977 bp Feature: domain Description: OMP_RagA_SusC Location: 744555-744972 bp Feature: domain Description: OMP_RagA_SusC Location: 744555-744972 bp Feature: gene Location: 744961-746643 bp Feature: RT Description: RVT_N Location: 745015-745258 bp Feature: RT Description: RVT_N Location: 745015-745258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745303-745957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7453 03 -745957 bp Feature: domain Description: GIIM Note: maturase Location: 746011-746242 bp Feature: domain Description: GIIM Note: maturase Location: 746011-746242 bp Feature: gene Location: 747267-749891 bp Feature: domain Description: OMP_RagA_SusC Location: 747399-749880 bp Feature: domain Description: OMP_RagA_SusC Location: 7473 99-749880 bp Feature: gene Location: 750734-751228 bp Feature: domain Description: Metallophos_2 Location: 750743-751166 bp Feature: domain Description: Metallophos_2 Location: 750743 -751166 bp Feature: gene Location: 1418849-1419853 bp Feature: domain Description: Bac_Flav_CT_J Location: 1418855-1419824 bp Feature: domain Description: Bac_Flav_CT_J Location: 1418855-1419824 bp Feature: gene Location: 1419857-1420399 bp Feature: gene Location: 1420383-1422065 bp Feature: RT Description: RVT_N Location: 1420437-1420680 bp Feature: RT Description: RVT_N Location: 142043 7-1420680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1420725-1421379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1420725-14213 79 bp Feature: domain Description: GIIM Note: maturase Location: 1421433-1421664 bp Feature: domain Description: GIIM Note: maturase Location: 142143 3 -1421664 bp Feature: gene Location: 1422689-1422901 bp Feature: domain Description: DUF4141 Location: 1422701-1422857 bp Feature: domain Description: DUF4141 Location: 1422701-1422857 bp Feature: gene Location: 1422925-1423305 bp Feature: domain Description: DUF3876 Location: 1423006-1423270 bp Feature: domain Description: DUF3 876 Location: 1423 006-1423 270 bp Feature: gene Location: 1423564-1425387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1423828-1424650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1423 828-1424650 bp Feature: domain Description: Intron_maturas2 Location: 1424824-1425067 bp Feature: domain Description: Intron_maturas2 Location: 1424824-1425067 bp Feature: domain Description: HNHc Note: nucleases Location: 1425178-1425349 bp Feature: domain Description: HNHc Note: nucleases Location: 1425178-14253 49 bp Feature: gene Location: 1425956-1428355 bp Feature: domain Description: Bac_Flav_CT_G Location: 1425959-1428347 bp Feature: domain Description: Bac_Flav_CT_G Location: 1425959-14283 47 bp Feature: gene Location: 1428352-1428684 bp Feature: domain Description: DUF4133 Location: 1428370-1428640 bp Feature: domain Description: DUF413 3 Location: 14283 70-1428640 bp Feature: gene Location: 1428696-1428938 bp Feature: domain Description: DUF4134 Location: 1428843-1428933 bp Feature: domain Description: DUF413 4 Location: 1428843 -142893 3 bp Feature: gene Location: 1428935-1430590 bp Feature: RT Description: RVT_N Location: 1428992-1429229 bp Feature: RT Description: RVT_N Location: 1428992-1429229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1429280-1429928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1429280-1429928 bp Feature: domain Description: GIIM Note: maturase Location: 1429985-1430216 bp Feature: domain Description: GIIM Note: maturase Location: 1429985-143 0216 bp Feature: gene Location: 1431206-1431442 bp Feature: domain Description: DUF4134 Location: 1431251-1431428 bp Feature: domain Description: DUF413 4 Location: 143 1251-143 1428 bp Feature: gene Location: 1431644-1432372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4141 (pfam13605), Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), SusD (NF033071), OMP_RagA_SusC (TIGR04056)
Metallophos_2 (pfam12850), DUF3876 (pfam12992), DUF4133 (pfam13571), DUF4134 (pfam13572)

Seq: KE159522.1 Parabacteroides goldsteinii dnLKV18 genomic scaffold acPFM-supercont1.5, whole genome shotgun sequence (355542 bp)
Overview 1 RT 1: 317602-326086 bp 2 RT 2: 349612-354599 bp Neighborhood of RT #1 [317602, 326086] SusD-like_3 SusD_RagB OMP_RagA_SusC RVT_N RVT-GII GIIM STN STN OMP_RagA_SusC Neighborhood of RT #2 [349612, 354599] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Feature: gene Location: 317602-319515 bp Feature: domain Description: SusD-like_3 Location: 317872-318178 bp Feature: domain Description: SusD-like_3 Location: 317872-318178 bp Feature: domain Description: SusD_RagB Location: 318571-319513 bp Feature: domain Description: SusD_RagB Location: 318571-319513 bp Feature: gene Location: 319536-319763 bp Feature: domain Description: OMP_RagA_SusC Location: 319650-319755 bp Feature: domain Description: OMP_RagA_SusC Location: 319650-319755 bp Feature: gene Location: 319747-321429 bp Feature: RT Description: RVT_N Location: 319801-320044 bp Feature: RT Description: RVT_N Location: 319801-32004 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320089-320743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320089-32074 3 bp Feature: domain Description: GIIM Note: maturase Location: 320797-321028 bp Feature: domain Description: GIIM Note: maturase Location: 320797-321028 bp Feature: gene Location: 322053-325394 bp Feature: domain Description: STN Location: 322194-322266 bp Feature: domain Description: STN Location: 322194 -322266 bp Feature: domain Description: STN Location: 322269-322404 bp Feature: domain Description: STN Location: 322269-3224 04 bp Feature: domain Description: OMP_RagA_SusC Location: 322467-325380 bp Feature: domain Description: OMP_RagA_SusC Location: 3224 67-325380 bp Feature: gene Location: 325778-326086 bp Feature: gene Location: 349612-351183 bp Feature: domain Description: Bac_Flav_CT_G Location: 349615-351181 bp Feature: domain Description: Bac_Flav_CT_G Location: 34 9615-351181 bp Feature: gene Location: 351205-351555 bp Feature: domain Description: Bac_Flav_CT_G Location: 351208-351547 bp Feature: domain Description: Bac_Flav_CT_G Location: 351208-35154 7 bp Feature: gene Location: 352124-353947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352388-353210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352388-353210 bp Feature: domain Description: Intron_maturas2 Location: 353384-353627 bp Feature: domain Description: Intron_maturas2 Location: 353384 -353627 bp Feature: domain Description: HNHc Note: nucleases Location: 353738-353909 bp Feature: domain Description: HNHc Note: nucleases Location: 353738-353909 bp Feature: gene Location: 354192-354323 bp Feature: gene Location: 354324-354599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD-like_3 (pfam14322), SusD_RagB (pfam07980), OMP_RagA_SusC (TIGR04056), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), STN (smart00965), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)