myRT

myRT report for GCA_000405325.1_ASM40532v1

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Seq: ASPB01000005.1 Atribacteria bacterium SCGC AB-164-D21 AB164D21DRAFT_contig_4_0.5_C, whole genome shotgun sequence (42541 bp)
Overview 1 RT 1: 7947-12841 bp Neighborhood of RT #1 [7947, 12858] LicD LicD RVT-GII RVT-GII PLN02653 GDP_FS_SDR_e Feature: gene Location: 7947-8627 bp Feature: domain Description: LicD Location: 8112-8202 bp Feature: domain Description: LicD Location: 81 1 2-8202 bp Feature: domain Description: LicD Location: 8364-8478 bp Feature: domain Description: LicD Location: 8364-8478 bp Feature: gene Location: 8740-8934 bp Feature: gene Location: 9198-9704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9546-9657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9546-9657 bp Feature: gene Location: 9746-10249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9749-10163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9749-1 01 63 bp Feature: gene Location: 10854-11906 bp Feature: domain Description: PLN02653 Location: 10860-11823 bp Feature: domain Description: PLN02653 Location: 1 0860-1 1 823 bp Feature: gene Location: 11920-12858 bp Feature: domain Description: GDP_FS_SDR_e Location: 11944-12841 bp Feature: domain Description: GDP_FS_SDR_e Location: 1 1 944-1 2841 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LicD (pfam04991), RVT-GII, PLN02653 (GDP-mannose 4,6-dehydratase), GDP_FS_SDR_e (cd05239)

Seq: ASPB01000008.1 Atribacteria bacterium SCGC AB-164-D21 AB164D21DRAFT_contig_7_0.8_C, whole genome shotgun sequence (34076 bp)
Overview 1 RT 1: 10651-16291 bp Neighborhood of RT #1 [10651, 16362] COG4875 COG4875 RVT-GII GIIM MarR Lon Feature: gene Location: 10651-10917 bp Feature: domain Description: COG4875 Location: 10750-10903 bp Feature: domain Description: COG4875 Location: 10750-10903 bp Feature: gene Location: 11014-11160 bp Feature: domain Description: COG4875 Location: 11023-11155 bp Feature: domain Description: COG4875 Location: 1102 3-11155 bp Feature: gene Location: 11705-12991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11960-12626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11960-12 62 6 bp Feature: domain Description: GIIM Note: maturase Location: 12722-12896 bp Feature: domain Description: GIIM Note: maturase Location: 12 72 2 -12 896 bp Feature: gene Location: 13323-13739 bp Feature: domain Description: MarR Location: 13380-13734 bp Feature: domain Description: MarR Location: 13380-13734 bp Feature: gene Location: 13978-16362 bp Feature: domain Description: Lon Location: 13999-16291 bp Feature: domain Description: Lon Location: 13999-162 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4875 (Uncharacterized protein ), RVT-GII, GIIM (pfam08388), MarR (pfam01047), Lon (COG0466)

Seq: ASPB01000024.1 Atribacteria bacterium SCGC AB-164-D21 AB164D21DRAFT_contig_22_0.24_C, whole genome shotgun sequence (19661 bp)
Overview 1 RT 1: 6888-12534 bp Neighborhood of RT #1 [6888, 12548] PEP_hydrolase RVT-GII Tm-1-like PepP Feature: gene Location: 6888-7724 bp Feature: domain Description: PEP_hydrolase Location: 6915-7716 bp Feature: domain Description: PEP_hydrolase Location: 6915-7716 bp Feature: gene Location: 7898-8131 bp Feature: gene Location: 8270-9628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8576-9257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8576-9257 bp Feature: gene Location: 9746-10990 bp Feature: domain Description: Tm-1-like Location: 9764-10976 bp Feature: domain Description: Tm-1-like Location: 9764-10976 bp Feature: gene Location: 11319-12548 bp Feature: domain Description: PepP Location: 11424-12534 bp Feature: domain Description: PepP Location: 11424-1253 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP_hydrolase (pfam09370), RVT-GII, Tm-1-like (cl02262), PepP (COG0006)

Seq: ASPB01000027.1 Atribacteria bacterium SCGC AB-164-D21 AB164D21DRAFT_contig_25_0.27_C, whole genome shotgun sequence (18087 bp)
Overview 1 RT 1: 226-4827 bp Neighborhood of RT #1 [226, 4835] PRK09183 PHA02517 RVT-GII GIIM InsE RpfG Feature: gene Location: 226-966 bp Feature: domain Description: PRK09183 Location: 235-955 bp Feature: domain Description: PRK09183 Location: 235-955 bp Feature: gene Location: 1032-1490 bp Feature: domain Description: PHA02517 Location: 1182-1485 bp Feature: domain Description: PHA02517 Location: 1182-14 85 bp Feature: gene Location: 1501-2748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1705-2362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1705-2362 bp Feature: domain Description: GIIM Note: maturase Location: 2449-2659 bp Feature: domain Description: GIIM Note: maturase Location: 24 4 9-2659 bp Feature: gene Location: 3266-3580 bp Feature: domain Description: InsE Location: 3296-3572 bp Feature: domain Description: InsE Location: 3296-3572 bp Feature: gene Location: 3705-4835 bp Feature: domain Description: RpfG Location: 4125-4827 bp Feature: domain Description: RpfG Location: 4 125-4 827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), RpfG (COG3437)

Seq: ASPB01000046.1 Atribacteria bacterium SCGC AB-164-D21 AB164D21DRAFT_contig_44_0.46_C, whole genome shotgun sequence (8253 bp)
Overview 1 RT 1: 4290-8026 bp Neighborhood of RT #1 [4290, 8070] RhaT RVT-GII GIIM Tas Feature: gene Location: 4290-4787 bp Feature: domain Description: RhaT Location: 4305-4776 bp Feature: domain Description: RhaT Location: 4305 -4776 bp Feature: gene Location: 5187-5315 bp Feature: gene Location: 5463-7019 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5955-6573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 95 5 -65 73 bp Feature: domain Description: GIIM Note: maturase Location: 6624-6837 bp Feature: domain Description: GIIM Note: maturase Location: 6624-6837 bp Feature: gene Location: 7099-8070 bp Feature: domain Description: Tas Location: 7102-8026 bp Feature: domain Description: Tas Location: 7102-8026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhaT (TIGR00776), RVT-GII, GIIM (pfam08388), Tas (COG0667)