myRT

myRT report for GCA_000405605.1_ASM40560v1

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Seq: ASPA01000003.1 Atribacteria bacterium SCGC AAA255-G05 A255G5DRAFT_contig_2_0.3_C, whole genome shotgun sequence (82990 bp)
Overview 1 RT 1: 20640-25950 bp Neighborhood of RT #1 [20640, 25958] PerM PRK05347 RVT-GII GIIM PEMT Feature: gene Location: 20640-21674 bp Feature: domain Description: PerM Location: 20685-21660 bp Feature: domain Description: PerM Location: 20685-21 660 bp Feature: gene Location: 21740-23443 bp Feature: domain Description: PRK05347 Location: 21761-23420 bp Feature: domain Description: PRK05347 Location: 21 761 -23420 bp Feature: gene Location: 23806-25092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24061-24727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24061 -24727 bp Feature: domain Description: GIIM Note: maturase Location: 24808-24997 bp Feature: domain Description: GIIM Note: maturase Location: 24808-24997 bp Feature: gene Location: 25483-25617 bp Feature: gene Location: 25644-25958 bp Feature: domain Description: PEMT Location: 25653-25950 bp Feature: domain Description: PEMT Location: 25653-25950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PerM (COG0628), PRK05347 (glutaminyl-tRNA synthetase; Provisional), RVT-GII, GIIM (pfam08388), PEMT (pfam04191)

Seq: ASPA01000007.1 Atribacteria bacterium SCGC AAA255-G05 A255G5DRAFT_contig_6_0.7_C, whole genome shotgun sequence (32835 bp)
Overview 1 RT 1: 15768-20730 bp Neighborhood of RT #1 [15768, 20732] AtuA FadR RVT-GII GIIM DdaH Feature: gene Location: 15768-17126 bp Feature: domain Description: AtuA Location: 15957-16764 bp Feature: domain Description: AtuA Location: 15957-16764 bp Feature: gene Location: 17222-17914 bp Feature: domain Description: FadR Location: 17234-17906 bp Feature: domain Description: FadR Location: 172 34-17906 bp Feature: gene Location: 18166-19578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18514-19132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18514-19132 bp Feature: domain Description: GIIM Note: maturase Location: 19183-19396 bp Feature: domain Description: GIIM Note: maturase Location: 19183-19396 bp Feature: gene Location: 19588-19719 bp Feature: gene Location: 19968-20732 bp Feature: domain Description: DdaH Location: 19974-20730 bp Feature: domain Description: DdaH Location: 19974-2 0730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AtuA (pfam07287), FadR (COG2186), RVT-GII, GIIM (pfam08388), DdaH (COG1834)

Seq: ASPA01000028.1 Atribacteria bacterium SCGC AAA255-G05 A255G5DRAFT_contig_26_0.28_C, whole genome shotgun sequence (24221 bp)
Overview 1 RT 1: 9998-14133 bp Neighborhood of RT #1 [9998, 14177] NirD RVT-CRISPR-like GIIM DUF2188 Feature: gene Location: 9998-10327 bp Feature: domain Description: NirD Location: 10004-10316 bp Feature: domain Description: NirD Location: 10004-103 16 bp Feature: gene Location: 11279-11482 bp Feature: gene Location: 11944-13242 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 12199-12820 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 12199-12820 bp Feature: domain Description: GIIM Note: maturase Location: 12895-13063 bp Feature: domain Description: GIIM Note: maturase Location: 12895-13 063 bp Feature: gene Location: 13253-13822 bp Feature: gene Location: 14001-14177 bp Feature: domain Description: DUF2188 Location: 14022-14133 bp Feature: domain Description: DUF2188 Location: 14022-1413 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), DUF2188 (pfam09954), NirD (COG2146)

Seq: ASPA01000037.1 Atribacteria bacterium SCGC AAA255-G05 A255G5DRAFT_contig_35_0.37_C, whole genome shotgun sequence (21765 bp)
Overview 1 RT 1: 4999-8820 bp Neighborhood of RT #1 [4999, 8882] COG3586 RVT-Retrons L1-EN Feature: gene Location: 4999-5919 bp Feature: domain Description: COG3586 Location: 5605-5908 bp Feature: domain Description: COG3586 Location: 5605-5908 bp Feature: gene Location: 6235-7146 bp Feature: gene Location: 7347-8072 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7494-8037 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 74 94 -8037 bp Feature: gene Location: 8122-8289 bp Feature: gene Location: 8352-8882 bp Feature: domain Description: L1-EN Location: 8367-8820 bp Feature: domain Description: L1-EN Location: 8367-8820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3586 (Predicted transport protein ), RVT-Retrons, L1-EN (cd09076)

Seq: ASPA01000038.1 Atribacteria bacterium SCGC AAA255-G05 A255G5DRAFT_contig_36_0.38_C, whole genome shotgun sequence (21365 bp)
Overview 1 RT 1: 15205-20651 bp Neighborhood of RT #1 [15205, 21205] rubredoxin_SM dCache_1 HK_WalK GGDEF RVT-GII RPA gelsolin_like Feature: gene Location: 15205-15333 bp Feature: domain Description: rubredoxin_SM Location: 15220-15289 bp Feature: domain Description: rubredoxin_SM Location: 15 220-15 289 bp Feature: gene Location: 15503-17191 bp Feature: domain Description: dCache_1 Location: 15599-16217 bp Feature: domain Description: dCache_1 Location: 15 5 99-16217 bp Feature: domain Description: HK_WalK Location: 16334-16643 bp Feature: domain Description: HK_WalK Location: 16334-16643 bp Feature: domain Description: GGDEF Location: 16676-17186 bp Feature: domain Description: GGDEF Location: 16676-17186 bp Feature: gene Location: 17517-18860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17826-18492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17826-18492 bp Feature: gene Location: 19000-19230 bp Feature: gene Location: 19661-21205 bp Feature: domain Description: RPA Location: 19733-20315 bp Feature: domain Description: RPA Location: 19733-20315 bp Feature: domain Description: gelsolin_like Location: 20360-20651 bp Feature: domain Description: gelsolin_like Location: 20360-2065 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rubredoxin_SM (cd00729), dCache_1 (pfam02743), HK_WalK (NF033092), GGDEF (TIGR00254), RVT-GII, RPA (pfam10134), gelsolin_like (cd11280)

Seq: ASPA01000046.1 Atribacteria bacterium SCGC AAA255-G05 A255G5DRAFT_contig_44_0.46_C, whole genome shotgun sequence (16687 bp)
Overview 1 RT 1: 4504-9561 bp Neighborhood of RT #1 [4504, 9578] DUF1844 TPR TPR RVT-GII nadD YqeK Feature: gene Location: 4504-4899 bp Feature: domain Description: DUF1844 Location: 4666-4876 bp Feature: domain Description: DUF1844 Location: 46 6 6 -4876 bp Feature: gene Location: 4946-5929 bp Feature: domain Description: TPR Location: 5048-5330 bp Feature: domain Description: TPR Location: 5048-5330 bp Feature: domain Description: TPR Location: 5411-5678 bp Feature: domain Description: TPR Location: 5411-56 78 bp Feature: gene Location: 6764-8074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7034-7694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7034-76 94 bp Feature: gene Location: 8339-8935 bp Feature: domain Description: nadD Location: 8351-8927 bp Feature: domain Description: nadD Location: 8351-8927 bp Feature: gene Location: 9006-9578 bp Feature: domain Description: YqeK Location: 9021-9561 bp Feature: domain Description: YqeK Location: 9021-956 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1844 (pfam08899), TPR (smart00028), RVT-GII, nadD (PRK07152), YqeK (COG1713)