myRT

myRT report for GCA_000407065.1_Ente_faec_Efm_NY2-1_V1

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Seq: KE136415.1 Enterococcus faecium EnGen0375 genomic scaffold acSxI-supercont1.13, whole genome shotgun sequence (39065 bp)
Overview 1 RT 1: 29161-35287 bp Neighborhood of RT #1 [29161, 35292] Rve HsdM RVT-AbiP2 Tra8 PinE Feature: gene Location: 29161-29841 bp Ori: EOT52510.1 Feature: domain Description: Rve Location: 29164-29812 bp Feature: domain Description: Rve Location: 291 64-2981 2 bp Feature: gene Location: 29864-31342 bp Ori: EOT52511.1 Feature: domain Description: HsdM Location: 29885-31310 bp Feature: domain Description: HsdM Location: 29885-31 31 0 bp Feature: gene Location: 31680-33155 bp Ori: EOT52512.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 32028-32493 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 32028-32493 bp Feature: gene Location: 33133-34086 bp Ori: EOT52513.1 Feature: domain Description: Tra8 Location: 33136-34063 bp Feature: domain Description: Tra8 Location: 331 36-34063 bp Feature: gene Location: 34729-35292 bp Ori: EOT52514.1 Feature: domain Description: PinE Location: 34741-35287 bp Feature: domain Description: PinE Location: 34741 -35287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826), PinE (COG1961)

Seq: KE136426.1 Enterococcus faecium EnGen0375 genomic scaffold acSxI-supercont1.9, whole genome shotgun sequence (137017 bp)
Overview 1 RT 1: 70151-74447 bp 2 RT 2: 131342-135523 bp Neighborhood of RT #1 [70151, 74455] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #2 [131342, 136350] AAA_10 RVT-GII Feature: gene Location: 70151-70300 bp Feature: gene Location: 70467-70946 bp Ori: EOT53273.1 Feature: domain Description: DUF3841 Location: 70476-70851 bp Feature: domain Description: DUF3841 Location: 70476-70851 bp Feature: gene Location: 71094-72620 bp Ori: EOT53274.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 71532-71988 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 71532 -71988 bp Feature: gene Location: 72766-73080 bp Ori: EOT53275.1 Feature: domain Description: AlbA_2 Location: 72805-72976 bp Feature: domain Description: AlbA_2 Location: 72 805-72 976 bp Feature: gene Location: 73196-74455 bp Ori: EOT53276.1 Feature: domain Description: PRK09290 Location: 73202-74447 bp Feature: domain Description: PRK092 90 Location: 732 02 -74447 bp Feature: gene Location: 131342-133465 bp Feature: gene Location: 133470-134390 bp Ori: EOT53254.1 Feature: domain Description: AAA_10 Location: 133473-134355 bp Feature: domain Description: AAA_10 Location: 133473-134355 bp Feature: gene Location: 134524-136350 bp Ori: EOT53255.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134824-135523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13482 4-13552 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), AAA_10 (pfam12846), RVT-GII

Seq: KE136411.1 Enterococcus faecium EnGen0375 genomic scaffold acSxI-supercont1.1, whole genome shotgun sequence (749790 bp)
Overview 1 RT 1: 511426-531254 bp 2 RT 2: 677247-684078 bp Neighborhood of RT #1 [511426, 531254] RelB_DinJ FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [677247, 684086] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 511426-511761 bp Ori: EOT55591.1 Feature: domain Description: RelB_DinJ Location: 511630-511753 bp Feature: domain Description: RelB_DinJ Location: 51163 0-511753 bp Feature: gene Location: 511844-512989 bp Ori: EOT55592.1 Feature: domain Description: FtsK Location: 512504-512969 bp Feature: domain Description: FtsK Location: 512504-512969 bp Feature: gene Location: 513704-515563 bp Ori: EOT55593.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514013-514754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514013 -514754 bp Feature: domain Description: HNHc Note: nucleases Location: 515309-515447 bp Feature: domain Description: HNHc Note: nucleases Location: 5153 09-515447 bp Feature: gene Location: 515657-515896 bp Feature: gene Location: 515974-516648 bp Ori: EOT55595.1 Feature: domain Description: Zeta_toxin Location: 516073-516556 bp Feature: domain Description: Zeta_toxin Location: 516073 -516556 bp Feature: gene Location: 518562-519746 bp Ori: EOT55600.1 Feature: domain Description: HTH_XRE Location: 518592-518736 bp Feature: domain Description: HTH_XRE Location: 518592-51873 6 bp Feature: domain Description: Rol_Rep_N Location: 518769-519033 bp Feature: domain Description: Rol_Rep_N Location: 518769-51903 3 bp Feature: domain Description: Rep_trans Location: 519057-519669 bp Feature: domain Description: Rep_trans Location: 519057-519669 bp Feature: gene Location: 519743-519880 bp Ori: EOT55601.1 Feature: domain Description: DUF3789 Location: 519770-519863 bp Feature: domain Description: DUF3 789 Location: 519770-519863 bp Feature: gene Location: 520626-522536 bp Ori: EOT55602.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520959-521697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 520959-521697 bp Feature: domain Description: HNHc Note: nucleases Location: 522252-522417 bp Feature: domain Description: HNHc Note: nucleases Location: 522252-522417 bp Feature: gene Location: 522981-523478 bp Ori: EOT55603.1 Feature: domain Description: ArdA Location: 522999-523464 bp Feature: domain Description: ArdA Location: 522999-523 464 bp Feature: gene Location: 523565-523957 bp Ori: EOT55604.1 Feature: domain Description: TcpE Location: 523583-523883 bp Feature: domain Description: TcpE Location: 523 583 -523 883 bp Feature: gene Location: 523941-525494 bp Ori: EOT55605.1 Feature: domain Description: AAA_10 Location: 525273-525459 bp Feature: domain Description: AAA_10 Location: 525273 -525459 bp Feature: gene Location: 526191-528017 bp Ori: EOT55606.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526491-527190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 526491-527190 bp Feature: gene Location: 528151-529068 bp Ori: EOT55607.1 Feature: domain Description: AAA_10 Location: 528154-529036 bp Feature: domain Description: AAA_10 Location: 528154-52903 6 bp Feature: gene Location: 529071-531254 bp Feature: gene Location: 677247-678128 bp Ori: EOT55357.1 Feature: domain Description: CcmA Location: 677250-678120 bp Feature: domain Description: CcmA Location: 677250-678120 bp Feature: gene Location: 678382-678981 bp Ori: EOT55358.1 Feature: domain Description: AcrR Location: 678400-678886 bp Feature: domain Description: AcrR Location: 678400-678886 bp Feature: gene Location: 679468-680856 bp Ori: EOT55359.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679789-680404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679789-680404 bp Feature: domain Description: GIIM Note: maturase Location: 680461-680677 bp Feature: domain Description: GIIM Note: maturase Location: 680461-680677 bp Feature: gene Location: 680949-682250 bp Ori: EOT55360.1 Feature: domain Description: CE4_DAC_u3_5s Location: 681618-682008 bp Feature: domain Description: CE4_DAC_u3 _5s Location: 681618-682008 bp Feature: gene Location: 682830-684086 bp Ori: EOT55361.1 Feature: domain Description: PRK13354 Location: 682833-684078 bp Feature: domain Description: PRK13 3 54 Location: 68283 3 -684078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK (COG1674), RVT-GII, HNHc (smart00507), Zeta_toxin (pfam06414), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), ArdA (pfam07275)
TcpE (pfam12648), AAA_10 (pfam12846), CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: KE136419.1 Enterococcus faecium EnGen0375 genomic scaffold acSxI-supercont1.2, whole genome shotgun sequence (689779 bp)
Overview 1 RT 1: 683728-689532 bp Neighborhood of RT #1 [683728, 689621] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 683728-684111 bp Ori: EOT54630.1 Feature: domain Description: DUF961 Location: 683743-684043 bp Feature: domain Description: DUF961 Location: 68374 3-684 04 3 bp Feature: gene Location: 684140-685285 bp Ori: EOT54631.1 Feature: domain Description: FtsK Location: 684749-685265 bp Feature: domain Description: FtsK Location: 684 74 9-685265 bp Feature: gene Location: 686000-687859 bp Ori: EOT54632.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686309-687050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 686309-687050 bp Feature: domain Description: HNHc Note: nucleases Location: 687605-687743 bp Feature: domain Description: HNHc Note: nucleases Location: 687605-68774 3 bp Feature: gene Location: 687953-688237 bp Feature: gene Location: 688416-689621 bp Ori: EOT54634.1 Feature: domain Description: HTH_XRE Location: 688461-688605 bp Feature: domain Description: HTH_XRE Location: 6884 61-688605 bp Feature: domain Description: Rol_Rep_N Location: 688632-688899 bp Feature: domain Description: Rol_Rep_N Location: 688632-688899 bp Feature: domain Description: Rep_trans Location: 688923-689532 bp Feature: domain Description: Rep_trans Location: 688923-689532 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)