myRT

myRT report for GCA_000407085.1_Ente_faec_Efm_NY2-2_V1

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Seq: KE136447.1 Enterococcus faecium EnGen0376 genomic scaffold acSxJ-supercont1.5, whole genome shotgun sequence (273752 bp)
Overview 1 RT 1: 67135-71431 bp 2 RT 2: 132122-151759 bp Neighborhood of RT #1 [67135, 71439] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #2 [132122, 151767] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 67135-67284 bp Feature: gene Location: 67451-67930 bp Ori: EOT35223.1 Feature: domain Description: DUF3841 Location: 67460-67835 bp Feature: domain Description: DUF3841 Location: 67460-67835 bp Feature: gene Location: 68078-69604 bp Ori: EOT35224.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 68516-68972 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6851 6-68972 bp Feature: gene Location: 69750-70064 bp Ori: EOT35225.1 Feature: domain Description: AlbA_2 Location: 69789-69960 bp Feature: domain Description: AlbA_2 Location: 69789-69960 bp Feature: gene Location: 70180-71439 bp Ori: EOT35226.1 Feature: domain Description: PRK09290 Location: 70186-71431 bp Feature: domain Description: PRK09290 Location: 701 86-71 431 bp Feature: gene Location: 132122-134245 bp Feature: gene Location: 134250-135170 bp Ori: EOT35047.1 Feature: domain Description: AAA_10 Location: 134253-135135 bp Feature: domain Description: AAA_1 0 Location: 1 34253-1 351 35 bp Feature: gene Location: 135304-137130 bp Ori: EOT35048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135604-136303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35604-1 36303 bp Feature: gene Location: 137827-139377 bp Ori: EOT35049.1 Feature: domain Description: AAA_10 Location: 139156-139339 bp Feature: domain Description: AAA_1 0 Location: 1 391 56-1 39339 bp Feature: gene Location: 139364-139753 bp Ori: EOT35050.1 Feature: domain Description: TcpE Location: 139382-139682 bp Feature: domain Description: TcpE Location: 1 39382-1 39682 bp Feature: gene Location: 139813-140316 bp Ori: EOT35051.1 Feature: domain Description: ArdA Location: 139831-140302 bp Feature: domain Description: ArdA Location: 1 39831 -1 40302 bp Feature: gene Location: 140657-142567 bp Ori: EOT35052.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140990-141728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40990-1 41 728 bp Feature: domain Description: HNHc Note: nucleases Location: 142283-142448 bp Feature: domain Description: HNHc Note: nucleases Location: 1 42283-1 42448 bp Feature: gene Location: 143313-143450 bp Ori: EOT35053.1 Feature: domain Description: DUF3789 Location: 143340-143433 bp Feature: domain Description: DUF3789 Location: 1 43340-1 43433 bp Feature: gene Location: 143447-144631 bp Ori: EOT35054.1 Feature: domain Description: HTH_XRE Location: 143477-143621 bp Feature: domain Description: HTH_XRE Location: 1 43477-1 43621 bp Feature: domain Description: Rol_Rep_N Location: 143654-143918 bp Feature: domain Description: Rol_Rep_N Location: 1 43654-1 4391 8 bp Feature: domain Description: Rep_trans Location: 143942-144554 bp Feature: domain Description: Rep_trans Location: 1 43942-1 44554 bp Feature: gene Location: 146545-147219 bp Ori: EOT35059.1 Feature: domain Description: Zeta_toxin Location: 146644-147127 bp Feature: domain Description: Zeta_toxin Location: 1 46644-1 471 27 bp Feature: gene Location: 147297-147536 bp Feature: gene Location: 147630-149489 bp Ori: EOT35061.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147939-148680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 47939-1 48680 bp Feature: domain Description: HNHc Note: nucleases Location: 149235-149373 bp Feature: domain Description: HNHc Note: nucleases Location: 1 49235-1 49373 bp Feature: gene Location: 150204-151349 bp Ori: EOT35062.1 Feature: domain Description: FtsK Location: 150864-151329 bp Feature: domain Description: FtsK Location: 1 50864-1 51 329 bp Feature: gene Location: 151432-151767 bp Ori: EOT35063.1 Feature: domain Description: RelB_DinJ Location: 151636-151759 bp Feature: domain Description: RelB_DinJ Location: 1 51 636-1 51 759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507), DUF3789 (pfam12664)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414), FtsK (COG1674), RelB_DinJ (TIGR02384)

Seq: KE136441.1 Enterococcus faecium EnGen0376 genomic scaffold acSxJ-supercont1.22, whole genome shotgun sequence (1699 bp)
Overview 1 RT 1: 58-871 bp Neighborhood of RT #1 [58, 1533] RVT-AbiP2 Feature: gene Location: 58-1533 bp Ori: EOT30833.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 406-871 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 406-871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2

Seq: KE136445.1 Enterococcus faecium EnGen0376 genomic scaffold acSxJ-supercont1.3, whole genome shotgun sequence (285831 bp)
Overview 1 RT 1: 45052-62357 bp 2 RT 2: 208371-215202 bp Neighborhood of RT #1 [45052, 62357] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [208371, 215210] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 45052-45435 bp Ori: EOT36379.1 Feature: domain Description: DUF961 Location: 45067-45367 bp Feature: domain Description: DUF961 Location: 45067-453 67 bp Feature: gene Location: 45464-46609 bp Ori: EOT36380.1 Feature: domain Description: FtsK Location: 46073-46589 bp Feature: domain Description: FtsK Location: 46073 -46589 bp Feature: gene Location: 47324-49183 bp Ori: EOT36381.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47633-48374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4763 3 -483 74 bp Feature: domain Description: HNHc Note: nucleases Location: 48929-49067 bp Feature: domain Description: HNHc Note: nucleases Location: 48929-49067 bp Feature: gene Location: 49277-49561 bp Feature: gene Location: 49740-50945 bp Ori: EOT36383.1 Feature: domain Description: HTH_XRE Location: 49785-49929 bp Feature: domain Description: HTH_XRE Location: 49785-49929 bp Feature: domain Description: Rol_Rep_N Location: 49956-50223 bp Feature: domain Description: Rol_Rep_N Location: 49956-50223 bp Feature: domain Description: Rep_trans Location: 50247-50856 bp Feature: domain Description: Rep_trans Location: 50247-50856 bp Feature: gene Location: 51729-53639 bp Ori: EOT36384.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52062-52800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52062-52800 bp Feature: domain Description: HNHc Note: nucleases Location: 53355-53520 bp Feature: domain Description: HNHc Note: nucleases Location: 53 3 55-53 520 bp Feature: gene Location: 54084-54581 bp Ori: EOT36385.1 Feature: domain Description: ArdA Location: 54102-54567 bp Feature: domain Description: ArdA Location: 54102-54567 bp Feature: gene Location: 54668-55060 bp Ori: EOT36386.1 Feature: domain Description: TcpE Location: 54686-54986 bp Feature: domain Description: TcpE Location: 54686-54986 bp Feature: gene Location: 55044-56597 bp Ori: EOT36387.1 Feature: domain Description: AAA_10 Location: 56376-56562 bp Feature: domain Description: AAA_10 Location: 563 76-56562 bp Feature: gene Location: 57294-59120 bp Ori: EOT36388.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57594-58293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57594-58293 bp Feature: gene Location: 59254-60171 bp Ori: EOT36389.1 Feature: domain Description: AAA_10 Location: 59257-60139 bp Feature: domain Description: AAA_10 Location: 59257-6013 9 bp Feature: gene Location: 60174-62357 bp Feature: gene Location: 208371-209252 bp Ori: EOT35855.1 Feature: domain Description: CcmA Location: 208374-209244 bp Feature: domain Description: CcmA Location: 2083 74-209244 bp Feature: gene Location: 209506-210105 bp Ori: EOT35856.1 Feature: domain Description: AcrR Location: 209524-210010 bp Feature: domain Description: AcrR Location: 209524-210010 bp Feature: gene Location: 210592-211980 bp Ori: EOT35857.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210913-211528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210913 -211528 bp Feature: domain Description: GIIM Note: maturase Location: 211585-211801 bp Feature: domain Description: GIIM Note: maturase Location: 211585-211801 bp Feature: gene Location: 212073-213374 bp Ori: EOT35858.1 Feature: domain Description: CE4_DAC_u3_5s Location: 212742-213132 bp Feature: domain Description: CE4_DAC_u3 _5s Location: 212742-213 13 2 bp Feature: gene Location: 213954-215210 bp Ori: EOT35859.1 Feature: domain Description: PRK13354 Location: 213957-215202 bp Feature: domain Description: PRK13 3 54 Location: 213 957-215202 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)