myRT

myRT report for GCA_000407105.1_Ente_faec_Efm_NY2-3_V1

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Seq: KE136460.1 Enterococcus faecium EnGen0377 genomic scaffold acSxK-supercont1.3, whole genome shotgun sequence (392179 bp)
Overview 1 RT 1: 376144-380440 bp Neighborhood of RT #1 [376144, 380448] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Feature: gene Location: 376144-376293 bp Feature: gene Location: 376460-376939 bp Ori: EOU00702.1 Feature: domain Description: DUF3841 Location: 376469-376844 bp Feature: domain Description: DUF3841 Location: 376469-376844 bp Feature: gene Location: 377087-378613 bp Ori: EOU00703.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 377525-377981 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 377525-377981 bp Feature: gene Location: 378759-379073 bp Ori: EOU00704.1 Feature: domain Description: AlbA_2 Location: 378798-378969 bp Feature: domain Description: AlbA_2 Location: 378798-378969 bp Feature: gene Location: 379189-380448 bp Ori: EOU00705.1 Feature: domain Description: PRK09290 Location: 379195-380440 bp Feature: domain Description: PRK09290 Location: 3791 95-380440 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed)

Seq: KE136465.1 Enterococcus faecium EnGen0377 genomic scaffold acSxK-supercont1.8, whole genome shotgun sequence (127549 bp)
Overview 1 RT 1: 117735-127550 bp Neighborhood of RT #1 [117735, 127549] RelB_DinJ FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII Feature: gene Location: 117735-118070 bp Ori: EOT99884.1 Feature: domain Description: RelB_DinJ Location: 117939-118062 bp Feature: domain Description: RelB_DinJ Location: 117939-118062 bp Feature: gene Location: 118153-119298 bp Ori: EOT99885.1 Feature: domain Description: FtsK Location: 118813-119278 bp Feature: domain Description: FtsK Location: 118813-1192 78 bp Feature: gene Location: 120013-121872 bp Ori: EOT99886.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120322-121063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 032 2 -12 1063 bp Feature: domain Description: HNHc Note: nucleases Location: 121618-121756 bp Feature: domain Description: HNHc Note: nucleases Location: 12 1618-12 1756 bp Feature: gene Location: 122161-122400 bp Feature: gene Location: 122478-123152 bp Ori: EOT99785.1 Feature: domain Description: Zeta_toxin Location: 122577-123060 bp Feature: domain Description: Zeta_toxin Location: 12 2 577-12 3060 bp Feature: gene Location: 125066-126250 bp Ori: EOT99790.1 Feature: domain Description: HTH_XRE Location: 125096-125240 bp Feature: domain Description: HTH_XRE Location: 12 5096-12 52 40 bp Feature: domain Description: Rol_Rep_N Location: 125273-125537 bp Feature: domain Description: Rol_Rep_N Location: 12 52 73-12 5537 bp Feature: domain Description: Rep_trans Location: 125561-126173 bp Feature: domain Description: Rep_trans Location: 12 5561-12 6173 bp Feature: gene Location: 126247-126384 bp Ori: EOT99791.1 Feature: domain Description: DUF3789 Location: 126274-126367 bp Feature: domain Description: DUF3789 Location: 12 62 74-12 6367 bp Feature: gene Location: 127130-127549 bp Ori: EOT99792.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127463-127550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 7463-12 7550 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelB_DinJ (TIGR02384), FtsK (COG1674), RVT-GII, HNHc (smart00507), Zeta_toxin (pfam06414), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664)

Seq: KE136459.1 Enterococcus faecium EnGen0377 genomic scaffold acSxK-supercont1.2, whole genome shotgun sequence (559540 bp)
Overview 1 RT 1: 275576-292881 bp 2 RT 2: 438130-444961 bp Neighborhood of RT #1 [275576, 292881] DUF961 FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [438130, 444969] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 275576-275959 bp Ori: EOU01328.1 Feature: domain Description: DUF961 Location: 275591-275891 bp Feature: domain Description: DUF961 Location: 275591-275891 bp Feature: gene Location: 275988-277133 bp Ori: EOU01329.1 Feature: domain Description: FtsK Location: 276597-277113 bp Feature: domain Description: FtsK Location: 276597-277113 bp Feature: gene Location: 277848-279707 bp Ori: EOU01330.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278157-278898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278157-278898 bp Feature: domain Description: HNHc Note: nucleases Location: 279453-279591 bp Feature: domain Description: HNHc Note: nucleases Location: 279453 -279591 bp Feature: gene Location: 279801-280085 bp Feature: gene Location: 280264-281469 bp Ori: EOU01332.1 Feature: domain Description: HTH_XRE Location: 280309-280453 bp Feature: domain Description: HTH_XRE Location: 2803 09-280453 bp Feature: domain Description: Rol_Rep_N Location: 280480-280747 bp Feature: domain Description: Rol_Rep_N Location: 280480-280747 bp Feature: domain Description: Rep_trans Location: 280771-281380 bp Feature: domain Description: Rep_trans Location: 280771-2813 80 bp Feature: gene Location: 282253-284163 bp Ori: EOU01333.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282586-283324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282586-283 3 24 bp Feature: domain Description: HNHc Note: nucleases Location: 283879-284044 bp Feature: domain Description: HNHc Note: nucleases Location: 283 879-284044 bp Feature: gene Location: 284608-285105 bp Ori: EOU01334.1 Feature: domain Description: ArdA Location: 284626-285091 bp Feature: domain Description: ArdA Location: 284626-285091 bp Feature: gene Location: 285192-285584 bp Ori: EOU01335.1 Feature: domain Description: TcpE Location: 285210-285510 bp Feature: domain Description: TcpE Location: 285210-285510 bp Feature: gene Location: 285568-287121 bp Ori: EOU01336.1 Feature: domain Description: AAA_10 Location: 286900-287086 bp Feature: domain Description: AAA_10 Location: 286900-287086 bp Feature: gene Location: 287818-289644 bp Ori: EOU01337.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288118-288817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 288118-288817 bp Feature: gene Location: 289778-290695 bp Ori: EOU01338.1 Feature: domain Description: AAA_10 Location: 289781-290663 bp Feature: domain Description: AAA_10 Location: 289781-290663 bp Feature: gene Location: 290698-292881 bp Feature: gene Location: 438130-439011 bp Ori: EOU01210.1 Feature: domain Description: CcmA Location: 438133-439003 bp Feature: domain Description: CcmA Location: 43 813 3 -43 9003 bp Feature: gene Location: 439265-439864 bp Ori: EOU01211.1 Feature: domain Description: AcrR Location: 439283-439769 bp Feature: domain Description: AcrR Location: 43 9283 -43 9769 bp Feature: gene Location: 440351-441739 bp Ori: EOU01212.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440672-441287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440672-441287 bp Feature: domain Description: GIIM Note: maturase Location: 441344-441560 bp Feature: domain Description: GIIM Note: maturase Location: 4413 44-441560 bp Feature: gene Location: 441832-443133 bp Ori: EOU01213.1 Feature: domain Description: CE4_DAC_u3_5s Location: 442501-442891 bp Feature: domain Description: CE4_DAC_u3 _5s Location: 442501-442891 bp Feature: gene Location: 443713-444969 bp Ori: EOU01214.1 Feature: domain Description: PRK13354 Location: 443716-444961 bp Feature: domain Description: PRK13 3 54 Location: 443 716-444961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF961 (pfam06125), FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846)
CcmA (COG4133), AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)

Seq: KE136456.1 Enterococcus faecium EnGen0377 genomic scaffold acSxK-supercont1.13, whole genome shotgun sequence (39381 bp)
Overview 1 RT 1: 34892-39353 bp Neighborhood of RT #1 [34892, 39376] Rve HsdM RVT-AbiP2 Tra8 Feature: gene Location: 34892-35131 bp Ori: EOT98295.1 Feature: domain Description: Rve Location: 34913-35102 bp Feature: domain Description: Rve Location: 34 913-35102 bp Feature: gene Location: 35154-36632 bp Ori: EOT98296.1 Feature: domain Description: HsdM Location: 35175-36600 bp Feature: domain Description: HsdM Location: 35175-36600 bp Feature: gene Location: 36970-38445 bp Ori: EOT98297.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 37318-37783 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 37318-37783 bp Feature: gene Location: 38423-39376 bp Ori: EOT98298.1 Feature: domain Description: Tra8 Location: 38426-39353 bp Feature: domain Description: Tra8 Location: 384 26-39353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), HsdM (COG0286), RVT-AbiP2, Tra8 (COG2826)