myRT

myRT report for GCA_000407245.1_Ente_aviu_ATCC14025_V2

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Seq: KE136500.1 Enterococcus avium ATCC 14025 genomic scaffold acyDI-supercont2.1, whole genome shotgun sequence (627492 bp)
Overview 1 RT 1: 283702-289081 bp 2 RT 2: 436315-443778 bp Neighborhood of RT #1 [283702, 289104] RVT-GII GIIM ABC_MutS-like MdlB Neighborhood of RT #2 [436315, 443789] Zn_peptidase CwlO1 PRK08581 RVT-GII GIIM UvrD ElaA Feature: gene Location: 283702-283974 bp Feature: gene Location: 284299-284421 bp Feature: gene Location: 284490-285734 bp Ori: EOU26531.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284694-285351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284694-285351 bp Feature: domain Description: GIIM Note: maturase Location: 285432-285648 bp Feature: domain Description: GIIM Note: maturase Location: 285432-285648 bp Feature: gene Location: 285818-287227 bp Ori: EOU26532.1 Feature: domain Description: ABC_MutS-like Location: 286562-287132 bp Feature: domain Description: ABC_MutS-like Location: 286562-2871 32 bp Feature: gene Location: 287365-289104 bp Ori: EOU26533.1 Feature: domain Description: MdlB Location: 287371-289081 bp Feature: domain Description: MdlB Location: 287371 -289081 bp Feature: gene Location: 436315-437208 bp Ori: EOU26674.1 Feature: domain Description: Zn_peptidase Location: 436318-437173 bp Feature: domain Description: Zn_peptidase Location: 43631 8-4371 73 bp Feature: gene Location: 437625-438971 bp Ori: EOU26675.1 Feature: domain Description: CwlO1 Location: 437631-438459 bp Feature: domain Description: CwlO1 Location: 437631 -438459 bp Feature: domain Description: PRK08581 Location: 438621-438879 bp Feature: domain Description: PRK08581 Location: 438621 -438879 bp Feature: gene Location: 439453-440841 bp Ori: EOU26676.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 439774-440389 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 439774-440389 bp Feature: domain Description: GIIM Note: maturase Location: 440446-440662 bp Feature: domain Description: GIIM Note: maturase Location: 440446-440662 bp Feature: gene Location: 441178-443325 bp Ori: EOU26677.1 Feature: domain Description: UvrD Location: 441301-443314 bp Feature: domain Description: UvrD Location: 441 301 -44331 4 bp Feature: gene Location: 443352-443789 bp Ori: EOU26678.1 Feature: domain Description: ElaA Location: 443415-443778 bp Feature: domain Description: ElaA Location: 44341 5-443778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ABC_MutS-like (cd03283), MdlB (COG1132), Zn_peptidase (pfam04228), CwlO1 (COG3883), PRK08581 (amidase domain-containing protein), UvrD (COG0210), ElaA (COG2153)

Seq: KE136509.1 Enterococcus avium ATCC 14025 genomic scaffold acyDI-supercont2.7, whole genome shotgun sequence (652010 bp)
Overview 1 RT 1: 94998-104890 bp 2 RT 2: 260203-267100 bp Neighborhood of RT #1 [94998, 104919] peptidase-T LPG_synthase_TM RVT-GII RVT-GII GIIM RVT-GII GIIM AL_MDR chaperone_ClpB Neighborhood of RT #2 [260203, 267147] DUF2922 RVT-GII GIIM RVT-GII GIIM RVT-GII argD PRK00942 Feature: gene Location: 94998-96227 bp Ori: EOU16556.1 Feature: domain Description: peptidase-T Location: 95004-96222 bp Feature: domain Description: peptidase-T Location: 95004-962 2 2 bp Feature: gene Location: 96330-97364 bp Ori: EOU16557.1 Feature: domain Description: LPG_synthase_TM Location: 96369-97287 bp Feature: domain Description: LPG_synthase_TM Location: 96369-972 87 bp Feature: gene Location: 97820-98623 bp Ori: EOU16558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98141-98615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98141-98615 bp Feature: gene Location: 98964-99086 bp Feature: gene Location: 99155-100399 bp Ori: EOU16560.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99359-100016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99359-100016 bp Feature: domain Description: GIIM Note: maturase Location: 100097-100313 bp Feature: domain Description: GIIM Note: maturase Location: 100097-100313 bp Feature: gene Location: 100518-101072 bp Ori: EOU16561.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100530-100620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100530-10062 0 bp Feature: domain Description: GIIM Note: maturase Location: 100677-100893 bp Feature: domain Description: GIIM Note: maturase Location: 100677-100893 bp Feature: gene Location: 101148-102158 bp Ori: EOU16562.1 Feature: domain Description: AL_MDR Location: 101160-102150 bp Feature: domain Description: AL_MDR Location: 101160-102 150 bp Feature: gene Location: 102316-104919 bp Ori: EOU16563.1 Feature: domain Description: chaperone_ClpB Location: 102334-104890 bp Feature: domain Description: chaperone_ClpB Location: 102 334-104890 bp Feature: gene Location: 260203-260709 bp Ori: EOU16709.1 Feature: domain Description: DUF2922 Location: 260233-260431 bp Feature: domain Description: DUF2 92 2 Location: 2 602 33-2 60431 bp Feature: gene Location: 260741-261124 bp Feature: gene Location: 261505-262059 bp Ori: EOU16711.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261517-261607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 61517-2 61607 bp Feature: domain Description: GIIM Note: maturase Location: 261664-261880 bp Feature: domain Description: GIIM Note: maturase Location: 2 61664-2 61880 bp Feature: gene Location: 262178-263422 bp Ori: EOU16712.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262382-263039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 382 -2 63039 bp Feature: domain Description: GIIM Note: maturase Location: 263120-263336 bp Feature: domain Description: GIIM Note: maturase Location: 2 6312 0-2 63336 bp Feature: gene Location: 263491-263613 bp Feature: gene Location: 263954-264757 bp Ori: EOU16714.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 264275-264749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 642 75-2 64749 bp Feature: gene Location: 265259-266401 bp Ori: EOU16715.1 Feature: domain Description: argD Location: 265262-266393 bp Feature: domain Description: argD Location: 2 652 62 -2 66393 bp Feature: gene Location: 266398-267147 bp Ori: EOU16716.1 Feature: domain Description: PRK00942 Location: 266407-267100 bp Feature: domain Description: PRK00942 Location: 2 66407-2 67100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT peptidase-T (TIGR01882), LPG_synthase_TM (pfam03706), RVT-GII, GIIM (pfam08388), AL_MDR (cd08252), chaperone_ClpB (TIGR03346), DUF2922 (pfam11148), argD (TIGR00707), PRK00942 (acetylglutamate kinase; Provisional)

Seq: KE136507.1 Enterococcus avium ATCC 14025 genomic scaffold acyDI-supercont2.5, whole genome shotgun sequence (600767 bp)
Overview 1 RT 1: 3865-8448 bp Neighborhood of RT #1 [3865, 8522] PHA02517 InsE RVT-GII FtsK DUF961 Feature: gene Location: 3865-4686 bp Ori: EOU19669.1 Feature: domain Description: PHA02517 Location: 3883-4663 bp Feature: domain Description: PHA02517 Location: 3 883 -4663 bp Feature: gene Location: 4737-4961 bp Ori: EOU19670.1 Feature: domain Description: InsE Location: 4758-4953 bp Feature: domain Description: InsE Location: 4758-4953 bp Feature: gene Location: 5061-6269 bp Ori: EOU19671.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5325-6147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 25-6147 bp Feature: gene Location: 6845-8062 bp Ori: EOU19672.1 Feature: domain Description: FtsK Location: 7490-7988 bp Feature: domain Description: FtsK Location: 7490-7988 bp Feature: gene Location: 8112-8522 bp Ori: EOU19673.1 Feature: domain Description: DUF961 Location: 8169-8448 bp Feature: domain Description: DUF961 Location: 8169-8448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, FtsK (COG1674), DUF961 (pfam06125)

Seq: KE136505.1 Enterococcus avium ATCC 14025 genomic scaffold acyDI-supercont2.3, whole genome shotgun sequence (664856 bp)
Overview 1 RT 1: 745-6069 bp 2 RT 2: 456892-462819 bp 3 RT 3: 490991-495931 bp Neighborhood of RT #1 [745, 6182] RVT-GII RVT-GII GIIM RVT-GII DEDD_Tnp_IS110 Transposase_20 HNHc Neighborhood of RT #2 [456892, 462819] RelB_DinJ FtsK_SpoIIIE RVT-GII RVT-GII GIIM group_II_RT_mat HNHc Neighborhood of RT #3 [490991, 495954] DUF3173 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like RVT-GII Relaxase TlpA_like_family Feature: gene Location: 745-1593 bp Ori: EOU21682.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039-1585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1039-1585 bp Feature: gene Location: 1934-2056 bp Feature: gene Location: 2125-3369 bp Ori: EOU21684.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2329-2986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2329-2986 bp Feature: domain Description: GIIM Note: maturase Location: 3067-3283 bp Feature: domain Description: GIIM Note: maturase Location: 3067-3283 bp Feature: gene Location: 3473-3895 bp Ori: EOU21685.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3479-3599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 79-3599 bp Feature: gene Location: 4285-5535 bp Ori: EOU21686.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 4300-4783 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 4 300-4 783 bp Feature: domain Description: Transposase_20 Location: 5140-5398 bp Feature: domain Description: Transposase_20 Location: 514 0-5398 bp Feature: gene Location: 5847-6182 bp Ori: EOU21687.1 Feature: domain Description: HNHc Note: nucleases Location: 5928-6069 bp Feature: domain Description: HNHc Note: nucleases Location: 5928-6069 bp Feature: gene Location: 456892-457227 bp Ori: EOU22120.1 Feature: domain Description: RelB_DinJ Location: 457096-457219 bp Feature: domain Description: RelB_DinJ Location: 4 57096-4 57219 bp Feature: gene Location: 457310-458287 bp Ori: EOU22121.1 Feature: domain Description: FtsK_SpoIIIE Location: 457961-458207 bp Feature: domain Description: FtsK_SpoIIIE Location: 4 57961-4 58207 bp Feature: gene Location: 458893-459840 bp Ori: EOU22122.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459157-459832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 59157-4 59832 bp Feature: gene Location: 460181-460303 bp Feature: gene Location: 460372-461616 bp Ori: EOU22124.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 460576-461233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 60576-4 61233 bp Feature: domain Description: GIIM Note: maturase Location: 461314-461530 bp Feature: domain Description: GIIM Note: maturase Location: 4 61314 -4 61530 bp Feature: gene Location: 461852-462661 bp Ori: EOU22125.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 461867-462098 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4 61867-4 62098 bp Feature: domain Description: HNHc Note: nucleases Location: 462371-462536 bp Feature: domain Description: HNHc Note: nucleases Location: 4 62371-4 62536 bp Feature: gene Location: 462661-462819 bp Feature: gene Location: 490991-491176 bp Ori: EOU22161.1 Feature: domain Description: DUF3173 Location: 490997-491168 bp Feature: domain Description: DUF3173 Location: 4 90997-4 91168 bp Feature: gene Location: 491181-492329 bp Ori: EOU22162.1 Feature: domain Description: Arm-DNA-bind_4 Location: 491226-491358 bp Feature: domain Description: Arm-DNA-bind_4 Location: 4 91226-4 91358 bp Feature: domain Description: Phage_int_SAM_3 Location: 491382-491550 bp Feature: domain Description: Phage_int_SAM_3 Location: 4 91382-4 91550 bp Feature: domain Description: INT_ICEBs1_C_like Location: 491748-492273 bp Feature: domain Description: INT_ICEBs1_C_like Location: 4 9174 8-4 92273 bp Feature: gene Location: 492686-493123 bp Ori: EOU22163.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 492791-493088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 92791-4 93088 bp Feature: gene Location: 493821-494183 bp Ori: EOU22164.1 Feature: domain Description: Relaxase Location: 493851-494148 bp Feature: domain Description: Relaxase Location: 4 93851-4 94 14 8 bp Feature: gene Location: 494803-495954 bp Ori: EOU22165.1 Feature: domain Description: TlpA_like_family Location: 495577-495931 bp Feature: domain Description: TlpA_like_family Location: 4 95577-4 95931 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), HNHc (smart00507), RelB_DinJ (TIGR02384), FtsK_SpoIIIE (pfam01580), group_II_RT_mat (TIGR04416), DUF3173 (pfam11372), Arm-DNA-bind_4 (pfam14657)
Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), Relaxase (pfam03432), TlpA_like_family (cd02966)

Seq: KE136504.1 Enterococcus avium ATCC 14025 genomic scaffold acyDI-supercont2.2, whole genome shotgun sequence (1309494 bp)
Overview 1 RT 1: 602454-609752 bp 2 RT 2: 951652-959351 bp Neighborhood of RT #1 [602454, 609889] VOC_like YorC RVT-GII RVT-GII GIIM RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #2 [951652, 959473] FtsW FtsW RVT-GII GIIM RVT-GII GIIM RVT-GII Hydrolase_4 Hydrolase_4 Pentapeptide_4 Pentapeptide_4 Feature: gene Location: 602454-602927 bp Ori: EOU23330.1 Feature: domain Description: VOC_like Location: 602457-602817 bp Feature: domain Description: VOC_like Location: 60245 7-602817 bp Feature: gene Location: 603171-603701 bp Ori: EOU23331.1 Feature: domain Description: YorC Location: 603183-603687 bp Feature: domain Description: YorC Location: 603183-603687 bp Feature: gene Location: 604188-604991 bp Ori: EOU23332.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604509-604983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6045 09-604983 bp Feature: gene Location: 605332-605454 bp Feature: gene Location: 605523-606767 bp Ori: EOU23334.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605727-606384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605 727-606384 bp Feature: domain Description: GIIM Note: maturase Location: 606465-606681 bp Feature: domain Description: GIIM Note: maturase Location: 606465 -606681 bp Feature: gene Location: 606886-607440 bp Ori: EOU23335.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606898-606988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 606898-606988 bp Feature: domain Description: GIIM Note: maturase Location: 607045-607261 bp Feature: domain Description: GIIM Note: maturase Location: 607045 -607261 bp Feature: gene Location: 607507-608364 bp Feature: gene Location: 608639-609889 bp Ori: EOU23337.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 608654-609128 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 60865 4-609128 bp Feature: domain Description: Transposase_20 Location: 609494-609752 bp Feature: domain Description: Transposase_20 Location: 609494-60975 2 bp Feature: gene Location: 951652-952791 bp Ori: EOU23669.1 Feature: domain Description: FtsW Location: 951661-952780 bp Feature: domain Description: FtsW Location: 95 1661-95 2780 bp Feature: gene Location: 952763-953911 bp Ori: EOU23670.1 Feature: domain Description: FtsW Location: 952772-953888 bp Feature: domain Description: FtsW Location: 95 2772-95 3888 bp Feature: gene Location: 954410-954964 bp Ori: EOU23671.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954422-954512 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 4422-95 45 12 bp Feature: domain Description: GIIM Note: maturase Location: 954569-954785 bp Feature: domain Description: GIIM Note: maturase Location: 95 45 69-95 4785 bp Feature: gene Location: 955083-956327 bp Ori: EOU23672.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 955287-955944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 5 287-95 5 944 bp Feature: domain Description: GIIM Note: maturase Location: 956025-956241 bp Feature: domain Description: GIIM Note: maturase Location: 95 6025 -95 6241 bp Feature: gene Location: 956396-956518 bp Feature: gene Location: 956859-957662 bp Ori: EOU23674.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957180-957654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 7180-95 765 4 bp Feature: gene Location: 958142-958837 bp Ori: EOU23675.1 Feature: domain Description: Hydrolase_4 Location: 958202-958556 bp Feature: domain Description: Hydrolase_4 Location: 95 8202-95 85 5 6 bp Feature: domain Description: Hydrolase_4 Location: 958634-958790 bp Feature: domain Description: Hydrolase_4 Location: 95 8634-95 8790 bp Feature: gene Location: 958838-959473 bp Ori: EOU23676.1 Feature: domain Description: Pentapeptide_4 Location: 958976-959096 bp Feature: domain Description: Pentapeptide_4 Location: 95 8976-95 9096 bp Feature: domain Description: Pentapeptide_4 Location: 959096-959351 bp Feature: domain Description: Pentapeptide_4 Location: 95 9096-95 935 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VOC_like (cd16355), YorC (COG4502), RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), FtsW (COG0772), Hydrolase_4 (pfam12146), Pentapeptide_4 (pfam13599)

Seq: KE136506.1 Enterococcus avium ATCC 14025 genomic scaffold acyDI-supercont2.4, whole genome shotgun sequence (408859 bp)
Overview 1 RT 1: 99396-107210 bp Neighborhood of RT #1 [99396, 107210] GramPos_pilinD1 GramPos_pilinD1 RrgB_K2N_iso_D2 GramPos_pilinD1 RVT-GII RVT-GII GIIM RVT-GII GIIM Feature: gene Location: 99396-100172 bp Ori: EOU20185.1 Feature: domain Description: GramPos_pilinD1 Location: 99513-99843 bp Feature: domain Description: GramPos_pilinD1 Location: 99513-99843 bp Feature: gene Location: 100162-101751 bp Ori: EOU20186.1 Feature: domain Description: GramPos_pilinD1 Location: 100267-100726 bp Feature: domain Description: GramPos_pilinD1 Location: 10026 7-100726 bp Feature: domain Description: RrgB_K2N_iso_D2 Location: 100759-101233 bp Feature: domain Description: RrgB_K2N_iso_D2 Location: 100759-101233 bp Feature: domain Description: GramPos_pilinD1 Location: 101266-101626 bp Feature: domain Description: GramPos_pilinD1 Location: 10126 6 -1016 26 bp Feature: gene Location: 102242-103045 bp Ori: EOU20187.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102563-103037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10256 3-103037 bp Feature: gene Location: 103386-103508 bp Feature: gene Location: 103577-104821 bp Ori: EOU20189.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103781-104438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103781-104438 bp Feature: domain Description: GIIM Note: maturase Location: 104519-104735 bp Feature: domain Description: GIIM Note: maturase Location: 104519-104735 bp Feature: gene Location: 104940-105494 bp Ori: EOU20190.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104952-105042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 104952-105042 bp Feature: domain Description: GIIM Note: maturase Location: 105099-105315 bp Feature: domain Description: GIIM Note: maturase Location: 105099-105315 bp Feature: gene Location: 105679-105849 bp Feature: gene Location: 107061-107210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GramPos_pilinD1 (pfam16555), RrgB_K2N_iso_D2 (TIGR04226), RVT-GII, GIIM (pfam08388)