myRT

myRT report for GCA_000407325.1_Ente_faec_Efm_NY2-2_V2

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Seq: KE136542.1 Enterococcus faecium EnGen0376 genomic scaffold acSxM-supercont2.3, whole genome shotgun sequence (265610 bp)
Overview 1 RT 1: 66005-72836 bp 2 RT 2: 218640-235877 bp Neighborhood of RT #1 [66005, 72844] PRK13354 CE4_DAC_u3_5s RVT-GII GIIM AcrR CcmA Neighborhood of RT #2 [218640, 235945] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc FtsK DUF961 Feature: gene Location: 66005-67261 bp Ori: EOT95999.1 Feature: domain Description: PRK13354 Location: 66008-67253 bp Feature: domain Description: PRK1 3354 Location: 66008-67253 bp Feature: gene Location: 67841-69142 bp Ori: EOT96000.1 Feature: domain Description: CE4_DAC_u3_5s Location: 68510-68900 bp Feature: domain Description: CE4_DAC_u3_5s Location: 6851 0-68900 bp Feature: gene Location: 69235-70623 bp Ori: EOT96001.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69556-70171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69556-701 71 bp Feature: domain Description: GIIM Note: maturase Location: 70228-70444 bp Feature: domain Description: GIIM Note: maturase Location: 70228-70444 bp Feature: gene Location: 71110-71709 bp Ori: EOT96002.1 Feature: domain Description: AcrR Location: 71128-71614 bp Feature: domain Description: AcrR Location: 71 1 28-71 61 4 bp Feature: gene Location: 71963-72844 bp Ori: EOT96003.1 Feature: domain Description: CcmA Location: 71966-72836 bp Feature: domain Description: CcmA Location: 71 966-72836 bp Feature: gene Location: 218640-220823 bp Feature: gene Location: 220826-221743 bp Ori: EOT96141.1 Feature: domain Description: AAA_10 Location: 220829-221711 bp Feature: domain Description: AAA_1 0 Location: 220829-221 71 1 bp Feature: gene Location: 221877-223703 bp Ori: EOT96142.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222177-222876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2221 77-222876 bp Feature: gene Location: 224400-225953 bp Ori: EOT96143.1 Feature: domain Description: AAA_10 Location: 225732-225918 bp Feature: domain Description: AAA_1 0 Location: 225732-22591 8 bp Feature: gene Location: 225937-226329 bp Ori: EOT96144.1 Feature: domain Description: TcpE Location: 225955-226255 bp Feature: domain Description: TcpE Location: 225955-226255 bp Feature: gene Location: 226416-226913 bp Ori: EOT96145.1 Feature: domain Description: ArdA Location: 226434-226899 bp Feature: domain Description: ArdA Location: 226434-226899 bp Feature: gene Location: 227358-229268 bp Ori: EOT96146.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227691-228429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 227691 -228429 bp Feature: domain Description: HNHc Note: nucleases Location: 228984-229149 bp Feature: domain Description: HNHc Note: nucleases Location: 228984-2291 49 bp Feature: gene Location: 230052-231257 bp Ori: EOT96147.1 Feature: domain Description: HTH_XRE Location: 230097-230241 bp Feature: domain Description: HTH_XRE Location: 230097-230241 bp Feature: domain Description: Rol_Rep_N Location: 230268-230535 bp Feature: domain Description: Rol_Rep_N Location: 230268-230535 bp Feature: domain Description: Rep_trans Location: 230559-231168 bp Feature: domain Description: Rep_trans Location: 230559-231 1 68 bp Feature: gene Location: 231436-231720 bp Feature: gene Location: 231814-233673 bp Ori: EOT96149.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232123-232864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2321 23-232864 bp Feature: domain Description: HNHc Note: nucleases Location: 233419-233557 bp Feature: domain Description: HNHc Note: nucleases Location: 23341 9-233557 bp Feature: gene Location: 234388-235533 bp Ori: EOT96150.1 Feature: domain Description: FtsK Location: 234997-235513 bp Feature: domain Description: FtsK Location: 234997-23551 3 bp Feature: gene Location: 235562-235945 bp Ori: EOT96151.1 Feature: domain Description: DUF961 Location: 235577-235877 bp Feature: domain Description: DUF961 Location: 235577-235877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13354 (tyrosyl-tRNA synthetase; Provisional), CE4_DAC_u3_5s (cd10972), RVT-GII, GIIM (pfam08388), AcrR (COG1309), CcmA (COG4133), AAA_10 (pfam12846), TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), FtsK (COG1674), DUF961 (pfam06125)

Seq: KE136543.1 Enterococcus faecium EnGen0376 genomic scaffold acSxM-supercont2.4, whole genome shotgun sequence (266677 bp)
Overview 1 RT 1: 67185-71481 bp 2 RT 2: 129259-148896 bp Neighborhood of RT #1 [67185, 71489] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #2 [129259, 148904] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 67185-67334 bp Feature: gene Location: 67501-67980 bp Ori: EOT95737.1 Feature: domain Description: DUF3841 Location: 67510-67885 bp Feature: domain Description: DUF3841 Location: 67510-67885 bp Feature: gene Location: 68128-69654 bp Ori: EOT95738.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 68566-69022 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 68566-6902 2 bp Feature: gene Location: 69800-70114 bp Ori: EOT95739.1 Feature: domain Description: AlbA_2 Location: 69839-70010 bp Feature: domain Description: AlbA_2 Location: 69839-70010 bp Feature: gene Location: 70230-71489 bp Ori: EOT95740.1 Feature: domain Description: PRK09290 Location: 70236-71481 bp Feature: domain Description: PRK092 90 Location: 702 36-71481 bp Feature: gene Location: 129259-131382 bp Feature: gene Location: 131387-132307 bp Ori: EOT95794.1 Feature: domain Description: AAA_10 Location: 131390-132272 bp Feature: domain Description: AAA_10 Location: 131390-132 2 72 bp Feature: gene Location: 132441-134267 bp Ori: EOT95795.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132741-133440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 741-133440 bp Feature: gene Location: 134964-136514 bp Ori: EOT95796.1 Feature: domain Description: AAA_10 Location: 136293-136476 bp Feature: domain Description: AAA_10 Location: 1362 93-136476 bp Feature: gene Location: 136501-136890 bp Ori: EOT95797.1 Feature: domain Description: TcpE Location: 136519-136819 bp Feature: domain Description: TcpE Location: 136519-136819 bp Feature: gene Location: 136950-137453 bp Ori: EOT95798.1 Feature: domain Description: ArdA Location: 136968-137439 bp Feature: domain Description: ArdA Location: 136968-137439 bp Feature: gene Location: 137794-139704 bp Ori: EOT95799.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138127-138865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13812 7-138865 bp Feature: domain Description: HNHc Note: nucleases Location: 139420-139585 bp Feature: domain Description: HNHc Note: nucleases Location: 13942 0-139585 bp Feature: gene Location: 140450-140587 bp Ori: EOT95800.1 Feature: domain Description: DUF3789 Location: 140477-140570 bp Feature: domain Description: DUF3789 Location: 140477-140570 bp Feature: gene Location: 140584-141768 bp Ori: EOT95801.1 Feature: domain Description: HTH_XRE Location: 140614-140758 bp Feature: domain Description: HTH_XRE Location: 140614-140758 bp Feature: domain Description: Rol_Rep_N Location: 140791-141055 bp Feature: domain Description: Rol_Rep_N Location: 140791-141055 bp Feature: domain Description: Rep_trans Location: 141079-141691 bp Feature: domain Description: Rep_trans Location: 141079-141691 bp Feature: gene Location: 143682-144356 bp Ori: EOT95806.1 Feature: domain Description: Zeta_toxin Location: 143781-144264 bp Feature: domain Description: Zeta_toxin Location: 143781-1442 64 bp Feature: gene Location: 144434-144673 bp Feature: gene Location: 144767-146626 bp Ori: EOT95808.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145076-145817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145076-145817 bp Feature: domain Description: HNHc Note: nucleases Location: 146372-146510 bp Feature: domain Description: HNHc Note: nucleases Location: 146372 -146510 bp Feature: gene Location: 147341-148486 bp Ori: EOT95809.1 Feature: domain Description: FtsK Location: 148001-148466 bp Feature: domain Description: FtsK Location: 148001-148466 bp Feature: gene Location: 148569-148904 bp Ori: EOT95810.1 Feature: domain Description: RelB_DinJ Location: 148773-148896 bp Feature: domain Description: RelB_DinJ Location: 148773-148896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507), DUF3789 (pfam12664)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Zeta_toxin (pfam06414), FtsK (COG1674), RelB_DinJ (TIGR02384)