myRT

myRT report for GCA_000407345.1_Ente_faec_Efm_NY2-3_V2

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Seq: KE136559.1 Enterococcus faecium EnGen0377 genomic scaffold acSxN-supercont2.7, whole genome shotgun sequence (39413 bp)
Overview 1 RT 1: 34543-39414 bp Neighborhood of RT #1 [34543, 39413] PinE Tra8 RVT-AbiP2 HsdM Feature: gene Location: 34543-35106 bp Ori: EOT96287.1 Feature: domain Description: PinE Location: 34555-35101 bp Feature: domain Description: PinE Location: 34555-351 01 bp Feature: gene Location: 35749-36702 bp Ori: EOT96288.1 Feature: domain Description: Tra8 Location: 35752-36679 bp Feature: domain Description: Tra8 Location: 35752-36679 bp Feature: gene Location: 36680-38155 bp Ori: EOT96289.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 37028-37493 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 37028-37493 bp Feature: gene Location: 38493-39413 bp Ori: EOT96290.1 Feature: domain Description: HsdM Location: 38514-39414 bp Feature: domain Description: HsdM Location: 3851 4-3941 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286)

Seq: KE136554.1 Enterococcus faecium EnGen0377 genomic scaffold acSxN-supercont2.2, whole genome shotgun sequence (1191799 bp)
Overview 1 RT 1: 476716-483547 bp 2 RT 2: 629354-646591 bp 3 RT 3: 992174-996470 bp 4 RT 4: 1054248-1073885 bp Neighborhood of RT #1 [476716, 483555] PRK13354 CE4_DAC_u3_5s RVT-GII GIIM AcrR CcmA Neighborhood of RT #2 [629354, 646659] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc FtsK DUF961 Neighborhood of RT #3 [992174, 996478] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #4 [1054248, 1073893] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 476716-477972 bp Ori: EOT98814.1 Feature: domain Description: PRK13354 Location: 476719-477964 bp Feature: domain Description: PRK13354 Location: 476719-477964 bp Feature: gene Location: 478552-479853 bp Ori: EOT98815.1 Feature: domain Description: CE4_DAC_u3_5s Location: 479221-479611 bp Feature: domain Description: CE4_DAC_u3_5s Location: 4792 2 1-479611 bp Feature: gene Location: 479946-481334 bp Ori: EOT98816.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480267-480882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4802 67-480882 bp Feature: domain Description: GIIM Note: maturase Location: 480939-481155 bp Feature: domain Description: GIIM Note: maturase Location: 480939-481155 bp Feature: gene Location: 481821-482420 bp Ori: EOT98817.1 Feature: domain Description: AcrR Location: 481839-482325 bp Feature: domain Description: AcrR Location: 481839-482 32 5 bp Feature: gene Location: 482674-483555 bp Ori: EOT98818.1 Feature: domain Description: CcmA Location: 482677-483547 bp Feature: domain Description: CcmA Location: 482 677-483547 bp Feature: gene Location: 629354-631537 bp Feature: gene Location: 631540-632457 bp Ori: EOT98956.1 Feature: domain Description: AAA_10 Location: 631543-632425 bp Feature: domain Description: AAA_10 Location: 631543-632 42 5 bp Feature: gene Location: 632591-634417 bp Ori: EOT98957.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632891-633590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632 891-633590 bp Feature: gene Location: 635114-636667 bp Ori: EOT98958.1 Feature: domain Description: AAA_10 Location: 636446-636632 bp Feature: domain Description: AAA_10 Location: 636446-636632 bp Feature: gene Location: 636651-637043 bp Ori: EOT98959.1 Feature: domain Description: TcpE Location: 636669-636969 bp Feature: domain Description: TcpE Location: 636669-636969 bp Feature: gene Location: 637130-637627 bp Ori: EOT98960.1 Feature: domain Description: ArdA Location: 637148-637613 bp Feature: domain Description: ArdA Location: 637148-637613 bp Feature: gene Location: 638072-639982 bp Ori: EOT98961.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 638405-639143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 638405-639143 bp Feature: domain Description: HNHc Note: nucleases Location: 639698-639863 bp Feature: domain Description: HNHc Note: nucleases Location: 639698-639863 bp Feature: gene Location: 640766-641971 bp Ori: EOT98962.1 Feature: domain Description: HTH_XRE Location: 640811-640955 bp Feature: domain Description: HTH_XRE Location: 640811-640955 bp Feature: domain Description: Rol_Rep_N Location: 640982-641249 bp Feature: domain Description: Rol_Rep_N Location: 640982 -6412 49 bp Feature: domain Description: Rep_trans Location: 641273-641882 bp Feature: domain Description: Rep_trans Location: 6412 73-641882 bp Feature: gene Location: 642150-642434 bp Feature: gene Location: 642528-644387 bp Ori: EOT98964.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642837-643578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642 837-643578 bp Feature: domain Description: HNHc Note: nucleases Location: 644133-644271 bp Feature: domain Description: HNHc Note: nucleases Location: 644133-6442 71 bp Feature: gene Location: 645102-646247 bp Ori: EOT98965.1 Feature: domain Description: FtsK Location: 645711-646227 bp Feature: domain Description: FtsK Location: 645711-6462 2 7 bp Feature: gene Location: 646276-646659 bp Ori: EOT98966.1 Feature: domain Description: DUF961 Location: 646291-646591 bp Feature: domain Description: DUF961 Location: 6462 91-646591 bp Feature: gene Location: 992174-992323 bp Feature: gene Location: 992490-992969 bp Ori: EOT99298.1 Feature: domain Description: DUF3841 Location: 992499-992874 bp Feature: domain Description: DUF3841 Location: 992 499-992 874 bp Feature: gene Location: 993117-994643 bp Ori: EOT99299.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 993555-994011 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 993555-994011 bp Feature: gene Location: 994789-995103 bp Ori: EOT99300.1 Feature: domain Description: AlbA_2 Location: 994828-994999 bp Feature: domain Description: AlbA_2 Location: 99482 8-994999 bp Feature: gene Location: 995219-996478 bp Ori: EOT99301.1 Feature: domain Description: PRK09290 Location: 995225-996470 bp Feature: domain Description: PRK092 90 Location: 9952 2 5-996470 bp Feature: gene Location: 1054248-1056371 bp Feature: gene Location: 1056376-1057296 bp Ori: EOT99355.1 Feature: domain Description: AAA_10 Location: 1056379-1057261 bp Feature: domain Description: AAA_10 Location: 1056379-10572 61 bp Feature: gene Location: 1057430-1059256 bp Ori: EOT99356.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057730-1058429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057730-105842 9 bp Feature: gene Location: 1059953-1061503 bp Ori: EOT99357.1 Feature: domain Description: AAA_10 Location: 1061282-1061465 bp Feature: domain Description: AAA_10 Location: 10612 82 -1061465 bp Feature: gene Location: 1061490-1061879 bp Ori: EOT99358.1 Feature: domain Description: TcpE Location: 1061508-1061808 bp Feature: domain Description: TcpE Location: 1061508-1061808 bp Feature: gene Location: 1061939-1062442 bp Ori: EOT99359.1 Feature: domain Description: ArdA Location: 1061957-1062428 bp Feature: domain Description: ArdA Location: 1061957-1062 42 8 bp Feature: gene Location: 1062783-1064693 bp Ori: EOT99360.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1063116-1063854 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1063116-1063854 bp Feature: domain Description: HNHc Note: nucleases Location: 1064409-1064574 bp Feature: domain Description: HNHc Note: nucleases Location: 1064409-1064574 bp Feature: gene Location: 1065439-1065576 bp Ori: EOT99361.1 Feature: domain Description: DUF3789 Location: 1065466-1065559 bp Feature: domain Description: DUF3789 Location: 1065466-1065559 bp Feature: gene Location: 1065573-1066757 bp Ori: EOT99362.1 Feature: domain Description: HTH_XRE Location: 1065603-1065747 bp Feature: domain Description: HTH_XRE Location: 1065603-1065747 bp Feature: domain Description: Rol_Rep_N Location: 1065780-1066044 bp Feature: domain Description: Rol_Rep_N Location: 1065780-1066044 bp Feature: domain Description: Rep_trans Location: 1066068-1066680 bp Feature: domain Description: Rep_trans Location: 1066068-1066680 bp Feature: gene Location: 1068671-1069345 bp Ori: EOT99367.1 Feature: domain Description: Zeta_toxin Location: 1068770-1069253 bp Feature: domain Description: Zeta_toxin Location: 1068770-10692 53 bp Feature: gene Location: 1069423-1069662 bp Feature: gene Location: 1069756-1071615 bp Ori: EOT99369.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1070065-1070806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1070065-1070806 bp Feature: domain Description: HNHc Note: nucleases Location: 1071361-1071499 bp Feature: domain Description: HNHc Note: nucleases Location: 1071361-1071499 bp Feature: gene Location: 1072330-1073475 bp Ori: EOT99370.1 Feature: domain Description: FtsK Location: 1072990-1073455 bp Feature: domain Description: FtsK Location: 1072 990-1073455 bp Feature: gene Location: 1073558-1073893 bp Ori: EOT99371.1 Feature: domain Description: RelB_DinJ Location: 1073762-1073885 bp Feature: domain Description: RelB_DinJ Location: 1073762 -1073885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13354 (tyrosyl-tRNA synthetase; Provisional), CE4_DAC_u3_5s (cd10972), RVT-GII, GIIM (pfam08388), AcrR (COG1309), CcmA (COG4133), AAA_10 (pfam12846), TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507)
HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), FtsK (COG1674), DUF961 (pfam06125), DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), DUF3789 (pfam12664)
Zeta_toxin (pfam06414), RelB_DinJ (TIGR02384)