myRT

myRT report for GCA_000407625.1_Ente_faec_Efm_NY2-1_V2

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Seq: ASWQ01000013.1 Enterococcus faecium EnGen0375 acSxL-supercont2.13, whole genome shotgun sequence (39413 bp)
Overview 1 RT 1: 31842-37944 bp Neighborhood of RT #1 [31842, 37973] PinE Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 31842-32405 bp Ori: EOT86439.1 Feature: domain Description: PinE Location: 31854-32400 bp Feature: domain Description: PinE Location: 31 854-32400 bp Feature: gene Location: 33048-34001 bp Ori: EOT86440.1 Feature: domain Description: Tra8 Location: 33051-33978 bp Feature: domain Description: Tra8 Location: 33051 -33978 bp Feature: gene Location: 33979-35454 bp Ori: EOT86441.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 34327-34792 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 34327-34792 bp Feature: gene Location: 35792-37270 bp Ori: EOT86442.1 Feature: domain Description: HsdM Location: 35813-37238 bp Feature: domain Description: HsdM Location: 3581 3-37238 bp Feature: gene Location: 37293-37973 bp Ori: EOT86443.1 Feature: domain Description: Rve Location: 37296-37944 bp Feature: domain Description: Rve Location: 37296-37944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)

Seq: ASWQ01000004.1 Enterococcus faecium EnGen0375 acSxL-supercont2.4, whole genome shotgun sequence (704695 bp)
Overview 1 RT 1: 130291-147528 bp 2 RT 2: 505203-509499 bp 3 RT 3: 567277-586914 bp Neighborhood of RT #1 [130291, 147596] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc FtsK DUF961 Neighborhood of RT #2 [505203, 509507] DUF3841 RVT-AbiP2 AlbA_2 PRK09290 Neighborhood of RT #3 [567277, 586922] AAA_10 RVT-GII AAA_10 TcpE ArdA RVT-GII HNHc DUF3789 HTH_XRE Rol_Rep_N Rep_trans Zeta_toxin RVT-GII HNHc FtsK RelB_DinJ Feature: gene Location: 130291-132474 bp Feature: gene Location: 132477-133394 bp Ori: EOT90744.1 Feature: domain Description: AAA_10 Location: 132480-133362 bp Feature: domain Description: AAA_10 Location: 132 480-133362 bp Feature: gene Location: 133528-135354 bp Ori: EOT90745.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133828-134527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13382 8-13452 7 bp Feature: gene Location: 136051-137604 bp Ori: EOT90746.1 Feature: domain Description: AAA_10 Location: 137383-137569 bp Feature: domain Description: AAA_10 Location: 137383-137569 bp Feature: gene Location: 137588-137980 bp Ori: EOT90747.1 Feature: domain Description: TcpE Location: 137606-137906 bp Feature: domain Description: TcpE Location: 137606-137906 bp Feature: gene Location: 138067-138564 bp Ori: EOT90748.1 Feature: domain Description: ArdA Location: 138085-138550 bp Feature: domain Description: ArdA Location: 138085-138550 bp Feature: gene Location: 139009-140919 bp Ori: EOT90749.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139342-140080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139342 -140080 bp Feature: domain Description: HNHc Note: nucleases Location: 140635-140800 bp Feature: domain Description: HNHc Note: nucleases Location: 140635-140800 bp Feature: gene Location: 141703-142908 bp Ori: EOT90750.1 Feature: domain Description: HTH_XRE Location: 141748-141892 bp Feature: domain Description: HTH_XRE Location: 141748-141892 bp Feature: domain Description: Rol_Rep_N Location: 141919-142186 bp Feature: domain Description: Rol_Rep_N Location: 141919-142 186 bp Feature: domain Description: Rep_trans Location: 142210-142819 bp Feature: domain Description: Rep_trans Location: 142 2 10-142 819 bp Feature: gene Location: 143087-143371 bp Feature: gene Location: 143465-145324 bp Ori: EOT90752.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143774-144515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143774-144515 bp Feature: domain Description: HNHc Note: nucleases Location: 145070-145208 bp Feature: domain Description: HNHc Note: nucleases Location: 145070-1452 08 bp Feature: gene Location: 146039-147184 bp Ori: EOT90753.1 Feature: domain Description: FtsK Location: 146648-147164 bp Feature: domain Description: FtsK Location: 146648-147164 bp Feature: gene Location: 147213-147596 bp Ori: EOT90754.1 Feature: domain Description: DUF961 Location: 147228-147528 bp Feature: domain Description: DUF961 Location: 1472 2 8-14752 8 bp Feature: gene Location: 505203-505352 bp Feature: gene Location: 505519-505998 bp Ori: EOT91098.1 Feature: domain Description: DUF3841 Location: 505528-505903 bp Feature: domain Description: DUF3841 Location: 50552 8-505903 bp Feature: gene Location: 506146-507672 bp Ori: EOT91099.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 506584-507040 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 506584-507040 bp Feature: gene Location: 507818-508132 bp Ori: EOT91100.1 Feature: domain Description: AlbA_2 Location: 507857-508028 bp Feature: domain Description: AlbA_2 Location: 507857-50802 8 bp Feature: gene Location: 508248-509507 bp Ori: EOT91101.1 Feature: domain Description: PRK09290 Location: 508254-509499 bp Feature: domain Description: PRK092 90 Location: 5082 54-509499 bp Feature: gene Location: 567277-569400 bp Feature: gene Location: 569405-570325 bp Ori: EOT91155.1 Feature: domain Description: AAA_10 Location: 569408-570290 bp Feature: domain Description: AAA_10 Location: 569408-5702 90 bp Feature: gene Location: 570459-572285 bp Ori: EOT91156.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570759-571458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570759-571458 bp Feature: gene Location: 572982-574532 bp Ori: EOT91157.1 Feature: domain Description: AAA_10 Location: 574311-574494 bp Feature: domain Description: AAA_10 Location: 574311-574494 bp Feature: gene Location: 574519-574908 bp Ori: EOT91158.1 Feature: domain Description: TcpE Location: 574537-574837 bp Feature: domain Description: TcpE Location: 574537-574837 bp Feature: gene Location: 574968-575471 bp Ori: EOT91159.1 Feature: domain Description: ArdA Location: 574986-575457 bp Feature: domain Description: ArdA Location: 574986-575457 bp Feature: gene Location: 575812-577722 bp Ori: EOT91160.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 576145-576883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 576145-576883 bp Feature: domain Description: HNHc Note: nucleases Location: 577438-577603 bp Feature: domain Description: HNHc Note: nucleases Location: 577438-577603 bp Feature: gene Location: 578468-578605 bp Ori: EOT91161.1 Feature: domain Description: DUF3789 Location: 578495-578588 bp Feature: domain Description: DUF3789 Location: 578495-578588 bp Feature: gene Location: 578602-579786 bp Ori: EOT91162.1 Feature: domain Description: HTH_XRE Location: 578632-578776 bp Feature: domain Description: HTH_XRE Location: 578632 -578776 bp Feature: domain Description: Rol_Rep_N Location: 578809-579073 bp Feature: domain Description: Rol_Rep_N Location: 578809-579073 bp Feature: domain Description: Rep_trans Location: 579097-579709 bp Feature: domain Description: Rep_trans Location: 579097-579709 bp Feature: gene Location: 581700-582374 bp Ori: EOT91167.1 Feature: domain Description: Zeta_toxin Location: 581799-582282 bp Feature: domain Description: Zeta_toxin Location: 581799-582 2 82 bp Feature: gene Location: 582452-582691 bp Feature: gene Location: 582785-584644 bp Ori: EOT91169.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583094-583835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583094-583835 bp Feature: domain Description: HNHc Note: nucleases Location: 584390-584528 bp Feature: domain Description: HNHc Note: nucleases Location: 584390-58452 8 bp Feature: gene Location: 585359-586504 bp Ori: EOT91170.1 Feature: domain Description: FtsK Location: 586019-586484 bp Feature: domain Description: FtsK Location: 586019-586484 bp Feature: gene Location: 586587-586922 bp Ori: EOT91171.1 Feature: domain Description: RelB_DinJ Location: 586791-586914 bp Feature: domain Description: RelB_DinJ Location: 586791-586914 bp Sorry, your browser does 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Associated domains:myRT AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648), ArdA (pfam07275), HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), FtsK (COG1674), DUF961 (pfam06125)
DUF3841 (pfam12952), RVT-AbiP2, AlbA_2 (pfam04326), PRK09290 (allantoate amidohydrolase; Reviewed), DUF3789 (pfam12664), Zeta_toxin (pfam06414), RelB_DinJ (TIGR02384)

Seq: ASWQ01000006.1 Enterococcus faecium EnGen0375 acSxL-supercont2.6, whole genome shotgun sequence (87745 bp)
Overview 1 RT 1: 14902-21733 bp Neighborhood of RT #1 [14902, 21741] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Feature: gene Location: 14902-15783 bp Ori: EOT90346.1 Feature: domain Description: CcmA Location: 14905-15775 bp Feature: domain Description: CcmA Location: 14905-15775 bp Feature: gene Location: 16037-16636 bp Ori: EOT90347.1 Feature: domain Description: AcrR Location: 16055-16541 bp Feature: domain Description: AcrR Location: 16055-16541 bp Feature: gene Location: 17123-18511 bp Ori: EOT90348.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17444-18059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17444-18059 bp Feature: domain Description: GIIM Note: maturase Location: 18116-18332 bp Feature: domain Description: GIIM Note: maturase Location: 18116-183 3 2 bp Feature: gene Location: 18604-19905 bp Ori: EOT90349.1 Feature: domain Description: CE4_DAC_u3_5s Location: 19273-19663 bp Feature: domain Description: CE4_DAC_u3 _5s Location: 19273 -19663 bp Feature: gene Location: 20485-21741 bp Ori: EOT90350.1 Feature: domain Description: PRK13354 Location: 20488-21733 bp Feature: domain Description: PRK13 3 54 Location: 20488-2173 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), AcrR (COG1309), RVT-GII, GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional)