myRT

myRT report for GCA_000408365.1_Esch_coli_KTE64_V1

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Seq: KE137028.1 Escherichia coli KTE64 genomic scaffold acHbq-supercont1.3, whole genome shotgun sequence (4996645 bp)
Overview 1 RT 1: 104455-110354 bp 2 RT 2: 1439031-1445808 bp 3 RT 3: 2086762-2093450 bp 4 RT 4: 2179526-2185517 bp Neighborhood of RT #1 [104455, 110389] PHA02517 COG3547 RVT-GII GIIM PHA02517 mhpA Neighborhood of RT #2 [1439031, 1445987] SSL2 RVT-Retrons COG3950 TIGR02646 Neighborhood of RT #3 [2086762, 2093515] gnd YhhI YhhI YhhI RVT-GII WcaA Neighborhood of RT #4 [2179526, 2185570] PHA02517 COG3547 RVT-GII GIIM HTH_38 Tra8 InsE Feature: gene Location: 104455-104661 bp Feature: domain Description: PHA02517 Location: 104458-104650 bp Feature: domain Description: PHA0251 7 Location: 1 04458-1 04650 bp Feature: gene Location: 104780-105856 bp Feature: domain Description: COG3547 Location: 104819-105740 bp Feature: domain Description: COG3547 Location: 1 0481 9-1 05740 bp Feature: gene Location: 106398-107921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106671-107403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 06671 -1 07403 bp Feature: domain Description: GIIM Note: maturase Location: 107478-107676 bp Feature: domain Description: GIIM Note: maturase Location: 1 07478-1 07676 bp Feature: gene Location: 108513-108752 bp Feature: domain Description: PHA02517 Location: 108516-108687 bp Feature: domain Description: PHA0251 7 Location: 1 0851 6-1 08687 bp Feature: gene Location: 109028-110389 bp Feature: domain Description: mhpA Location: 109034-110354 bp Feature: domain Description: mhpA Location: 1 09034-1 1 0354 bp Feature: gene Location: 1439031-1442021 bp Feature: domain Description: SSL2 Location: 1439187-1440165 bp Feature: domain Description: SSL2 Location: 1 4391 87-1 4401 65 bp Feature: gene Location: 1441917-1442192 bp Feature: gene Location: 1442750-1443685 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1442852-1443452 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 442852-1 443452 bp Feature: gene Location: 1443682-1445334 bp Feature: domain Description: COG3950 Location: 1443880-1445296 bp Feature: domain Description: COG3950 Location: 1 443880-1 445296 bp Feature: gene Location: 1445337-1445987 bp Feature: domain Description: TIGR02646 Location: 1445403-1445808 bp Feature: domain Description: TIGR02646 Location: 1 445403-1 445808 bp Feature: gene Location: 2086762-2088168 bp Feature: domain Description: gnd Location: 2086777-2088166 bp Feature: domain Description: gnd Location: 2086777-20881 66 bp Feature: gene Location: 2088322-2089458 bp Feature: domain Description: YhhI Location: 2088325-2088688 bp Feature: domain Description: YhhI Location: 2088325-2088688 bp Feature: domain Description: YhhI Location: 2088745-2089099 bp Feature: domain Description: YhhI Location: 2088745-2089099 bp Feature: domain Description: YhhI Location: 2089135-2089378 bp Feature: domain Description: YhhI Location: 20891 35-2089378 bp Feature: gene Location: 2090276-2090986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2090552-2090918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2090552-209091 8 bp Feature: gene Location: 2091523-2092728 bp Feature: gene Location: 2092733-2093515 bp Feature: domain Description: WcaA Location: 2092754-2093450 bp Feature: domain Description: WcaA Location: 2092754-2093450 bp Feature: gene Location: 2179526-2179732 bp Feature: domain Description: PHA02517 Location: 2179529-2179703 bp Feature: domain Description: PHA0251 7 Location: 21 79529-21 79703 bp Feature: gene Location: 2179851-2180927 bp Feature: domain Description: COG3547 Location: 2179890-2180811 bp Feature: domain Description: COG3547 Location: 21 79890-21 8081 1 bp Feature: gene Location: 2181469-2182992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2181742-2182474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 81 742-21 82474 bp Feature: domain Description: GIIM Note: maturase Location: 2182552-2182747 bp Feature: domain Description: GIIM Note: maturase Location: 21 82552-21 82747 bp Feature: gene Location: 2184140-2185291 bp Feature: domain Description: HTH_38 Location: 2184149-2184263 bp Feature: domain Description: HTH_38 Location: 21 841 49-21 84263 bp Feature: domain Description: Tra8 Location: 2184299-2185280 bp Feature: domain Description: Tra8 Location: 21 84299-21 85280 bp Feature: gene Location: 2185211-2185570 bp Feature: domain Description: InsE Location: 2185214-2185517 bp Feature: domain Description: InsE Location: 21 8521 4-21 8551 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), mhpA (PRK06183), SSL2 (COG1061), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), gnd (TIGR00873)
YhhI (COG5433), WcaA (TIGR04017), HTH_38 (pfam13936), Tra8 (COG2826), InsE (COG2963)

Seq: KE137032.1 Escherichia coli KTE64 genomic scaffold acHbq-supercont1.7, whole genome shotgun sequence (78815 bp)
Overview 1 RT 1: 39720-44037 bp Neighborhood of RT #1 [39720, 44042] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 39720-39899 bp Feature: domain Description: DDE_Tnp_IS1 Location: 39723-39855 bp Feature: domain Description: DDE_Tnp_IS1 Location: 3972 3-39855 bp Feature: gene Location: 40028-40303 bp Feature: domain Description: InsA Location: 40034-40298 bp Feature: domain Description: InsA Location: 40034-402 98 bp Feature: gene Location: 40456-41940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40858-41548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40858-41548 bp Feature: gene Location: 42346-42771 bp Feature: domain Description: PRK10276 Location: 42349-42757 bp Feature: domain Description: PRK102 76 Location: 42 349-42 757 bp Feature: gene Location: 42771-44042 bp Feature: domain Description: umuC Location: 42774-44037 bp Feature: domain Description: umuC Location: 42 774-44037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)