myRT

myRT report for GCA_000408565.1_Esch_coli_KTE100_V1

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Seq: KE137155.1 Escherichia coli KTE100 genomic scaffold acHbI-supercont1.1, whole genome shotgun sequence (5176203 bp)
Overview 1 RT 1: 388654-393819 bp 2 RT 2: 981067-987221 bp 3 RT 3: 1092890-1098615 bp 4 RT 4: 1947494-1949719 bp 5 RT 5: 2516954-2518732 bp 6 RT 6: 2940331-2944198 bp 7 RT 7: 3025056-3029077 bp 8 RT 8: 3139890-3146509 bp 9 RT 9: 4739992-4744449 bp Neighborhood of RT #1 [388654, 393819] InsE PHA02517 RVT-GII GIIM COG3547 Neighborhood of RT #2 [981067, 987304] PHA02517 RVT-GII GIIM fruct_sucro_rep scrB_fam Neighborhood of RT #3 [1092890, 1098650] COG3547 RVT-GII PHA02517 mhpA Neighborhood of RT #4 [1947494, 1949718] PRK11025 PRK00884 RVT-GII Neighborhood of RT #5 [2516954, 2518733] InsE PHA02517 RVT-GII Neighborhood of RT #6 [2940331, 2944198] RVT-Retrons HTH_XRE Neighborhood of RT #7 [3025056, 3029079] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #8 [3139890, 3147399] P Q RVT-AbiP2 Phage_GPA Neighborhood of RT #9 [4739992, 4744451] TnsD PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 388654-388776 bp Ori: EOW12474.1 Feature: domain Description: InsE Location: 388666-388771 bp Feature: domain Description: InsE Location: 388666-388771 bp Feature: gene Location: 388773-389252 bp Ori: EOW12475.1 Feature: domain Description: PHA02517 Location: 388839-389190 bp Feature: domain Description: PHA0251 7 Location: 388839-3891 90 bp Feature: gene Location: 389844-391367 bp Ori: EOW12476.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390117-390849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3901 1 7-390849 bp Feature: domain Description: GIIM Note: maturase Location: 390924-391122 bp Feature: domain Description: GIIM Note: maturase Location: 390924-391 1 22 bp Feature: gene Location: 391909-392985 bp Ori: EOW12477.1 Feature: domain Description: COG3547 Location: 391948-392869 bp Feature: domain Description: COG3547 Location: 391 948-392869 bp Feature: gene Location: 393475-393819 bp Feature: gene Location: 981067-981820 bp Feature: gene Location: 982082-982321 bp Ori: EOW11090.1 Feature: domain Description: PHA02517 Location: 982085-982256 bp Feature: domain Description: PHA0251 7 Location: 982085-982256 bp Feature: gene Location: 982913-984436 bp Ori: EOW11091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 983186-983918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9831 86-98391 8 bp Feature: domain Description: GIIM Note: maturase Location: 983993-984191 bp Feature: domain Description: GIIM Note: maturase Location: 983993-9841 91 bp Feature: gene Location: 984870-985874 bp Ori: EOW11092.1 Feature: domain Description: fruct_sucro_rep Location: 984891-985869 bp Feature: domain Description: fruct_sucro_rep Location: 984891 -985869 bp Feature: gene Location: 985904-987304 bp Ori: EOW11093.1 Feature: domain Description: scrB_fam Location: 985949-987221 bp Feature: domain Description: scrB_fam Location: 985949-987221 bp Feature: gene Location: 1092890-1093966 bp Ori: EOW10763.1 Feature: domain Description: COG3547 Location: 1092929-1093850 bp Feature: domain Description: COG3547 Location: 1 092929-1 093850 bp Feature: gene Location: 1094508-1095615 bp Feature: gene Location: 1095626-1096182 bp Ori: EOW10391.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1095899-1096175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 095899-1 0961 75 bp Feature: gene Location: 1096774-1097013 bp Ori: EOW10392.1 Feature: domain Description: PHA02517 Location: 1096777-1096948 bp Feature: domain Description: PHA0251 7 Location: 1 096777-1 096948 bp Feature: gene Location: 1097289-1098650 bp Ori: EOW10393.1 Feature: domain Description: mhpA Location: 1097295-1098615 bp Feature: domain Description: mhpA Location: 1 097295-1 09861 5 bp Feature: gene Location: 1947494-1948453 bp Ori: EOW09100.1 Feature: domain Description: PRK11025 Location: 1947497-1948448 bp Feature: domain Description: PRK1 1 025 Location: 1 947497-1 948448 bp Feature: gene Location: 1948565-1948975 bp Ori: EOW09101.1 Feature: domain Description: PRK00884 Location: 1948769-1948970 bp Feature: domain Description: PRK00884 Location: 1 948769-1 948970 bp Feature: gene Location: 1949389-1949718 bp Ori: EOW09102.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1949662-1949719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 949662-1 94971 9 bp Feature: gene Location: 2516954-2517277 bp Ori: EOW07572.1 Feature: domain Description: InsE Location: 2516966-2517275 bp Feature: domain Description: InsE Location: 251 6966-251 7275 bp Feature: gene Location: 2517277-2517756 bp Ori: EOW07573.1 Feature: domain Description: PHA02517 Location: 2517337-2517691 bp Feature: domain Description: PHA0251 7 Location: 251 7337-251 7691 bp Feature: gene Location: 2518348-2518733 bp Ori: EOW07574.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2518621-2518732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 8621 -251 8732 bp Feature: gene Location: 2940331-2940921 bp Feature: gene Location: 2941648-2942298 bp Feature: gene Location: 2942518-2943618 bp Ori: EOW07204.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2942659-2943211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2942659-294321 1 bp Feature: gene Location: 2943611-2943892 bp Ori: EOW07205.1 Feature: domain Description: HTH_XRE Location: 2943626-2943791 bp Feature: domain Description: HTH_XRE Location: 2943626-2943791 bp Feature: gene Location: 2943983-2944198 bp Feature: gene Location: 3025056-3025457 bp Feature: gene Location: 3025596-3026042 bp Ori: EOW07277.1 Feature: domain Description: PHA02517 Location: 3025599-3026040 bp Feature: domain Description: PHA0251 7 Location: 3025599-3026040 bp Feature: gene Location: 3026159-3027682 bp Ori: EOW07278.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3026432-3027164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3026432-30271 64 bp Feature: domain Description: GIIM Note: maturase Location: 3027239-3027437 bp Feature: domain Description: GIIM Note: maturase Location: 3027239-3027437 bp Feature: gene Location: 3028274-3028753 bp Ori: EOW07279.1 Feature: domain Description: PHA02517 Location: 3028334-3028688 bp Feature: domain Description: PHA0251 7 Location: 3028334-3028688 bp Feature: gene Location: 3028753-3029079 bp Ori: EOW07280.1 Feature: domain Description: InsE Location: 3028756-3029077 bp Feature: domain Description: InsE Location: 3028756-3029077 bp Feature: gene Location: 3139890-3141662 bp Ori: EOW07386.1 Feature: domain Description: P Location: 3139917-3141648 bp Feature: domain Description: P Location: 31 3991 7-31 41 648 bp Feature: gene Location: 3141662-3142696 bp Ori: EOW07387.1 Feature: domain Description: Q Location: 3141665-3142688 bp Feature: domain Description: Q Location: 31 41 665-31 42688 bp Feature: gene Location: 3143091-3144635 bp Ori: EOW07388.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3143508-3143961 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 31 43508-31 43961 bp Feature: gene Location: 3144801-3145019 bp Feature: gene Location: 3145123-3147399 bp Ori: EOW07390.1 Feature: domain Description: Phage_GPA Location: 3145522-3146509 bp Feature: domain Description: Phage_GPA Location: 31 45522-31 46509 bp Feature: gene Location: 4739992-4740984 bp Ori: EOW02754.1 Feature: domain Description: TnsD Location: 4740481-4740952 bp Feature: domain Description: TnsD Location: 4740481 -4740952 bp Feature: gene Location: 4740971-4741417 bp Ori: EOW02755.1 Feature: domain Description: PHA02517 Location: 4740974-4741415 bp Feature: domain Description: PHA0251 7 Location: 4740974-4741 41 5 bp Feature: gene Location: 4741534-4743057 bp Ori: EOW02756.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4741807-4742539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4741 807-4742539 bp Feature: domain Description: GIIM Note: maturase Location: 4742614-4742812 bp Feature: domain Description: GIIM Note: maturase Location: 474261 4-474281 2 bp Feature: gene Location: 4743649-4744128 bp Ori: EOW02757.1 Feature: domain Description: PHA02517 Location: 4743709-4744063 bp Feature: domain Description: PHA0251 7 Location: 4743709-4744063 bp Feature: gene Location: 4744128-4744451 bp Ori: EOW02758.1 Feature: domain Description: InsE Location: 4744140-4744449 bp Feature: domain Description: InsE Location: 47441 40-4744449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), fruct_sucro_rep (TIGR02417), scrB_fam (TIGR01322), mhpA (PRK06183), PRK11025 (23S rRNA pseudouridine(955/2504/2580) synthase RluC), PRK00884 (Maf-like protein; Reviewed)
RVT-Retrons, HTH_XRE (smart00530), P (PHA02535), Q (PHA02536), RVT-AbiP2, Phage_GPA (pfam05840), TnsD (pfam15978)