myRT

myRT report for GCA_000408605.1_Esch_coli_KTE103_V1

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Seq: KE137187.1 Escherichia coli KTE103 genomic scaffold acHbu-supercont1.5, whole genome shotgun sequence (2090611 bp)
Overview 1 RT 1: 243-4691 bp 2 RT 2: 1006389-1011769 bp Neighborhood of RT #1 [243, 4691] Q FRG RVT-Retrons HTH_XRE Neighborhood of RT #2 [1006389, 1011771] FaeA PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 243-1277 bp Ori: EOW13116.1 Feature: domain Description: Q Location: 246-1269 bp Feature: domain Description: Q Location: 246-1 269 bp Feature: gene Location: 1790-3154 bp Ori: EOW13117.1 Feature: domain Description: FRG Location: 2357-2642 bp Feature: domain Description: FRG Location: 2357-2642 bp Feature: gene Location: 3263-4240 bp Ori: EOW13118.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3470-4013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3470-401 3 bp Feature: gene Location: 4179-4499 bp Ori: EOW13119.1 Feature: domain Description: HTH_XRE Location: 4194-4353 bp Feature: domain Description: HTH_XRE Location: 41 94-4353 bp Feature: gene Location: 4536-4691 bp Feature: gene Location: 1006389-1006610 bp Ori: EOW12154.1 Feature: domain Description: FaeA Location: 1006392-1006569 bp Feature: domain Description: FaeA Location: 1 006392-1 006569 bp Feature: gene Location: 1008374-1008733 bp Ori: EOW11985.1 Feature: domain Description: PHA02517 Location: 1008377-1008731 bp Feature: domain Description: PHA0251 7 Location: 1 008377-1 008731 bp Feature: gene Location: 1008850-1010373 bp Ori: EOW11986.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1009123-1009855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0091 23-1 009855 bp Feature: domain Description: GIIM Note: maturase Location: 1009930-1010128 bp Feature: domain Description: GIIM Note: maturase Location: 1 009930-1 01 01 28 bp Feature: gene Location: 1010965-1011423 bp Ori: EOW11987.1 Feature: domain Description: PHA02517 Location: 1011073-1011358 bp Feature: domain Description: PHA0251 7 Location: 1 01 1 073-1 01 1 358 bp Feature: gene Location: 1011445-1011771 bp Ori: EOW11988.1 Feature: domain Description: InsE Location: 1011448-1011769 bp Feature: domain Description: InsE Location: 1 01 1 448-1 01 1 769 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530), FaeA (pfam04703), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: KE137186.1 Escherichia coli KTE103 genomic scaffold acHbu-supercont1.4, whole genome shotgun sequence (2881989 bp)
Overview 1 RT 1: 459890-464835 bp Neighborhood of RT #1 [459890, 464837] InsG RVT-GII GIIM fecE Feature: gene Location: 459890-460030 bp Feature: gene Location: 460053-461165 bp Ori: EOW20470.1 Feature: domain Description: InsG Location: 460056-461094 bp Feature: domain Description: InsG Location: 460056-461094 bp Feature: gene Location: 461258-462604 bp Ori: EOW20471.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461354-462086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461354-462 086 bp Feature: domain Description: GIIM Note: maturase Location: 462161-462359 bp Feature: domain Description: GIIM Note: maturase Location: 462 161-462 359 bp Feature: gene Location: 463255-463512 bp Feature: gene Location: 464070-464837 bp Ori: EOW20473.1 Feature: domain Description: fecE Location: 464073-464835 bp Feature: domain Description: fecE Location: 464073-464835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsG (COG3385), RVT-GII, GIIM (pfam08388), fecE (PRK11231)

Seq: KE137188.1 Escherichia coli KTE103 genomic scaffold acHbu-supercont1.6, whole genome shotgun sequence (90480 bp)
Overview 1 RT 1: 6855-11289 bp Neighborhood of RT #1 [6855, 11294] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 6855-7046 bp Feature: gene Location: 7362-7892 bp Feature: gene Location: 8467-10368 bp Ori: EOW08536.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8734-9565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 873 4-9565 bp Feature: domain Description: Intron_maturas2 Location: 9679-9937 bp Feature: domain Description: Intron_maturas2 Location: 9679-993 7 bp Feature: domain Description: HNHc Note: nucleases Location: 10111-10273 bp Feature: domain Description: HNHc Note: nucleases Location: 10111-10273 bp Feature: gene Location: 10563-11003 bp Ori: EOW08537.1 Feature: domain Description: PRK13732 Location: 10566-11001 bp Feature: domain Description: PRK13 73 2 Location: 10566-11001 bp Feature: gene Location: 11061-11294 bp Ori: EOW08538.1 Feature: domain Description: DUF905 Location: 11091-11289 bp Feature: domain Description: DUF905 Location: 11091-11289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: KE137168.1 Escherichia coli KTE103 genomic scaffold acHbu-supercont1.1, whole genome shotgun sequence (113958 bp)
Overview 1 RT 1: 11950-14625 bp Neighborhood of RT #1 [11950, 14633] InsE PHA02517 RVT-GII PRK10173 PRK10173 Feature: gene Location: 11950-12276 bp Ori: EOW22850.1 Feature: domain Description: InsE Location: 11953-12274 bp Feature: domain Description: InsE Location: 11953-12274 bp Feature: gene Location: 12276-12755 bp Ori: EOW22851.1 Feature: domain Description: PHA02517 Location: 12336-12690 bp Feature: domain Description: PHA02517 Location: 12336-12690 bp Feature: gene Location: 13347-13850 bp Ori: EOW22852.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13620-13689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13620-13689 bp Feature: gene Location: 13889-14209 bp Ori: EOW22853.1 Feature: domain Description: PRK10173 Location: 13892-14120 bp Feature: domain Description: PRK10173 Location: 13892-14 120 bp Feature: gene Location: 14184-14633 bp Ori: EOW22854.1 Feature: domain Description: PRK10173 Location: 14187-14625 bp Feature: domain Description: PRK10173 Location: 14 187-14 625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)