myRT

myRT report for GCA_000408805.1_Esch_coli_KTE159_V1

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Seq: KE137292.1 Escherichia sp. KTE159 genomic scaffold acHbi-supercont1.2, whole genome shotgun sequence (3535769 bp)
Overview 1 RT 1: 1568428-1574297 bp 2 RT 2: 1806221-1812756 bp Neighborhood of RT #1 [1568428, 1574299] ribA aconitase_1 RVT-GII GIIM YmiA Neighborhood of RT #2 [1806221, 1812890] PRK04155 RfaF RVT-Retrons ABC_ATPase ABC_ATPase Phage_int_SAM_2 Integrase_1 Feature: gene Location: 1568428-1569018 bp Feature: domain Description: ribA Location: 1568440-1569010 bp Feature: domain Description: ribA Location: 1 568440-1 56901 0 bp Feature: gene Location: 1569082-1571757 bp Feature: domain Description: aconitase_1 Location: 1569136-1571752 bp Feature: domain Description: aconitase_1 Location: 1 5691 36-1 571 752 bp Feature: gene Location: 1572049-1573338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1572370-1572988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 572370-1 572988 bp Feature: domain Description: GIIM Note: maturase Location: 1573036-1573255 bp Feature: domain Description: GIIM Note: maturase Location: 1 573036-1 573255 bp Feature: gene Location: 1573998-1574168 bp Feature: gene Location: 1574171-1574299 bp Feature: domain Description: YmiA Location: 1574174-1574297 bp Feature: domain Description: YmiA Location: 1 5741 74-1 574297 bp Feature: gene Location: 1806221-1807072 bp Feature: domain Description: PRK04155 Location: 1806227-1807064 bp Feature: domain Description: PRK041 55 Location: 1 806227-1 807064 bp Feature: gene Location: 1807377-1808435 bp Feature: domain Description: RfaF Location: 1807530-1808388 bp Feature: domain Description: RfaF Location: 1 807530-1 808388 bp Feature: gene Location: 1809266-1810237 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1809398-1809965 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 809398-1 809965 bp Feature: gene Location: 1810234-1811544 bp Feature: domain Description: ABC_ATPase Location: 1810288-1810381 bp Feature: domain Description: ABC_ATPase Location: 1 81 0288-1 81 0381 bp Feature: domain Description: ABC_ATPase Location: 1810777-1810972 bp Feature: domain Description: ABC_ATPase Location: 1 81 0777-1 81 0972 bp Feature: gene Location: 1812006-1812890 bp Feature: domain Description: Phage_int_SAM_2 Location: 1812009-1812279 bp Feature: domain Description: Phage_int_SAM_2 Location: 1 81 2009-1 81 2279 bp Feature: domain Description: Integrase_1 Location: 1812312-1812756 bp Feature: domain Description: Integrase_1 Location: 1 81 231 2-1 81 2756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ribA (TIGR00505), aconitase_1 (TIGR01341), RVT-GII, GIIM (pfam08388), YmiA (NF000536), PRK04155 (protein deglycase HchA), RfaF (COG0859), RVT-Retrons, ABC_ATPase (pfam09818), Phage_int_SAM_2 (pfam12834)
Integrase_1 (pfam12835)

Seq: KE137291.1 Escherichia sp. KTE159 genomic scaffold acHbi-supercont1.1, whole genome shotgun sequence (174422 bp)
Overview 1 RT 1: 79316-85760 bp Neighborhood of RT #1 [79316, 85771] RVT-GII GIIM PRK09685 PRK13529 Feature: gene Location: 79316-79423 bp Feature: gene Location: 79727-80029 bp Feature: gene Location: 80053-81576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80326-81058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8032 6-81058 bp Feature: domain Description: GIIM Note: maturase Location: 81136-81331 bp Feature: domain Description: GIIM Note: maturase Location: 81136-81331 bp Feature: gene Location: 82330-83322 bp Feature: domain Description: PRK09685 Location: 82471-83272 bp Feature: domain Description: PRK09685 Location: 82 471-832 72 bp Feature: gene Location: 84119-85771 bp Feature: domain Description: PRK13529 Location: 84128-85760 bp Feature: domain Description: PRK1352 9 Location: 8412 8-85760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09685 (DNA-binding transcriptional activator FeaR; Provisional), PRK13529 (oxaloacetate-decarboxylating malate dehydrogenase)