myRT

myRT report for GCA_000408825.1_Esch_coli_KTE170_V1

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Seq: KE137306.1 Escherichia coli KTE170 genomic scaffold acHbD-supercont1.5, whole genome shotgun sequence (131909 bp)
Overview 1 RT 1: 23123-27056 bp Neighborhood of RT #1 [23123, 27061] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 23123-23653 bp Feature: gene Location: 24228-26129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24495-25326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24495-25326 bp Feature: domain Description: Intron_maturas2 Location: 25440-25698 bp Feature: domain Description: Intron_maturas2 Location: 25440-25698 bp Feature: domain Description: HNHc Note: nucleases Location: 25872-26034 bp Feature: domain Description: HNHc Note: nucleases Location: 25872-26034 bp Feature: gene Location: 26324-26770 bp Feature: domain Description: PRK13732 Location: 26327-26768 bp Feature: domain Description: PRK1 3732 Location: 26327-26768 bp Feature: gene Location: 26828-27061 bp Feature: domain Description: DUF905 Location: 26858-27056 bp Feature: domain Description: DUF905 Location: 26858-27056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: KE137303.1 Escherichia coli KTE170 genomic scaffold acHbD-supercont1.2, whole genome shotgun sequence (1967370 bp)
Overview 1 RT 1: 295710-299421 bp 2 RT 2: 303720-308871 bp 3 RT 3: 765388-771712 bp Neighborhood of RT #1 [295710, 299495] InsE PHA02517 RVT-GII GIIM PHA02517 DUF2254 Neighborhood of RT #2 [303720, 308873] InsE PHA02517 RVT-GII GIIM fecE Neighborhood of RT #3 [765388, 771712] YhhI YhhI YhhI RVT-GII GIIM YhhI YhhI YhhI Feature: gene Location: 295710-295982 bp Feature: domain Description: InsE Location: 295719-295968 bp Feature: domain Description: InsE Location: 2 95719-2 95968 bp Feature: gene Location: 296224-296463 bp Feature: domain Description: PHA02517 Location: 296227-296398 bp Feature: domain Description: PHA02 517 Location: 2 962 2 7-2 96398 bp Feature: gene Location: 297055-298578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 297328-298060 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9732 8-2 98060 bp Feature: domain Description: GIIM Note: maturase Location: 298135-298333 bp Feature: domain Description: GIIM Note: maturase Location: 2 98135-2 98333 bp Feature: gene Location: 298773-299147 bp Feature: domain Description: PHA02517 Location: 298776-299136 bp Feature: domain Description: PHA02 517 Location: 2 98776-2 99136 bp Feature: gene Location: 299082-299495 bp Feature: domain Description: DUF2254 Location: 299124-299421 bp Feature: domain Description: DUF2 2 54 Location: 2 9912 4-2 9942 1 bp Feature: gene Location: 303720-304088 bp Feature: domain Description: InsE Location: 303723-304014 bp Feature: domain Description: InsE Location: 30372 3-304014 bp Feature: gene Location: 304287-304526 bp Feature: domain Description: PHA02517 Location: 304290-304461 bp Feature: domain Description: PHA02 517 Location: 3042 90-304461 bp Feature: gene Location: 305118-306641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305391-306123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305391-30612 3 bp Feature: domain Description: GIIM Note: maturase Location: 306198-306396 bp Feature: domain Description: GIIM Note: maturase Location: 306198-306396 bp Feature: gene Location: 307292-307549 bp Feature: gene Location: 308106-308873 bp Feature: domain Description: fecE Location: 308109-308871 bp Feature: domain Description: fecE Location: 308109-308871 bp Feature: gene Location: 765388-766350 bp Feature: gene Location: 766663-767619 bp Feature: domain Description: YhhI Location: 766666-767011 bp Feature: domain Description: YhhI Location: 766666-767011 bp Feature: domain Description: YhhI Location: 767068-767422 bp Feature: domain Description: YhhI Location: 767068-76742 2 bp Feature: domain Description: YhhI Location: 767422-767602 bp Feature: domain Description: YhhI Location: 76742 2 -767602 bp Feature: gene Location: 768151-769401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 768355-769012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 768355-769012 bp Feature: domain Description: GIIM Note: maturase Location: 769093-769315 bp Feature: domain Description: GIIM Note: maturase Location: 769093-769315 bp Feature: gene Location: 769953-771089 bp Feature: domain Description: YhhI Location: 769956-770319 bp Feature: domain Description: YhhI Location: 769956-770319 bp Feature: domain Description: YhhI Location: 770376-770730 bp Feature: domain Description: YhhI Location: 770376-770730 bp Feature: domain Description: YhhI Location: 770748-770991 bp Feature: domain Description: YhhI Location: 770748-770991 bp Feature: gene Location: 771209-771712 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DUF2254 (pfam10011), fecE (PRK11231), YhhI (COG5433)

Seq: KE137305.1 Escherichia coli KTE170 genomic scaffold acHbD-supercont1.4, whole genome shotgun sequence (2831413 bp)
Overview 1 RT 1: 644177-648625 bp 2 RT 2: 1672732-1676334 bp 3 RT 3: 2674034-2678297 bp Neighborhood of RT #1 [644177, 648625] Q FRG RVT-Retrons HTH_XRE Neighborhood of RT #2 [1672732, 1676336] RVT-GII InsE PHA02517 Neighborhood of RT #3 [2674034, 2678545] PHA02517 RVT-GII GIIM InsE YcjR Feature: gene Location: 644177-645211 bp Feature: domain Description: Q Location: 644180-645203 bp Feature: domain Description: Q Location: 644180-645203 bp Feature: gene Location: 645724-647088 bp Feature: domain Description: FRG Location: 646291-646576 bp Feature: domain Description: FRG Location: 646291-646576 bp Feature: gene Location: 647197-648174 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 647404-647947 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 647404-647947 bp Feature: gene Location: 648113-648433 bp Feature: domain Description: HTH_XRE Location: 648128-648287 bp Feature: domain Description: HTH_XRE Location: 648128-648287 bp Feature: gene Location: 648470-648625 bp Feature: gene Location: 1672732-1673648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1673005-1673641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1673 005-1673 641 bp Feature: gene Location: 1674692-1675003 bp Feature: domain Description: InsE Location: 1674695-1674986 bp Feature: domain Description: InsE Location: 1674695-1674986 bp Feature: gene Location: 1675536-1676336 bp Feature: domain Description: PHA02517 Location: 1675599-1676334 bp Feature: domain Description: PHA02517 Location: 1675599-16763 3 4 bp Feature: gene Location: 2674034-2674429 bp Feature: gene Location: 2674399-2674839 bp Feature: domain Description: PHA02517 Location: 2674402-2674810 bp Feature: domain Description: PHA02517 Location: 2674402-2674810 bp Feature: gene Location: 2674968-2676491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2675241-2675973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2675241-2675973 bp Feature: domain Description: GIIM Note: maturase Location: 2676048-2676246 bp Feature: domain Description: GIIM Note: maturase Location: 2676048-2676246 bp Feature: gene Location: 2677535-2677846 bp Feature: domain Description: InsE Location: 2677538-2677829 bp Feature: domain Description: InsE Location: 267753 8-2677829 bp Feature: gene Location: 2677931-2678545 bp Feature: domain Description: YcjR Location: 2678000-2678297 bp Feature: domain Description: YcjR Location: 2678000-2678297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530), RVT-GII, InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), GIIM (pfam08388), YcjR (COG1082)