myRT

myRT report for GCA_000408845.1_Esch_coli_KTE172_V1

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Seq: KE137316.1 Escherichia sp. KTE172 genomic scaffold acHaD-supercont1.3, whole genome shotgun sequence (5135999 bp)
Overview 1 RT 1: 1140353-1144801 bp 2 RT 2: 4085476-4091820 bp Neighborhood of RT #1 [1140353, 1144801] Q FRG RVT-Retrons HTH_XRE Neighborhood of RT #2 [4085476, 4091820] YhhI YhhI RVT-GII GIIM DDE_Tnp_1_assoc Feature: gene Location: 1140353-1141387 bp Feature: domain Description: Q Location: 1140356-1141379 bp Feature: domain Description: Q Location: 1 1 40356-1 1 41 379 bp Feature: gene Location: 1141900-1143264 bp Feature: domain Description: FRG Location: 1142467-1142752 bp Feature: domain Description: FRG Location: 1 1 42467-1 1 42752 bp Feature: gene Location: 1143373-1144350 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1143580-1144123 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 43580-1 1 441 23 bp Feature: gene Location: 1144289-1144609 bp Feature: domain Description: HTH_XRE Location: 1144304-1144463 bp Feature: domain Description: HTH_XRE Location: 1 1 44304-1 1 44463 bp Feature: gene Location: 1144646-1144801 bp Feature: gene Location: 4085476-4086438 bp Feature: gene Location: 4087206-4087778 bp Feature: domain Description: YhhI Location: 4087227-4087581 bp Feature: domain Description: YhhI Location: 4087227-4087581 bp Feature: domain Description: YhhI Location: 4087581-4087761 bp Feature: domain Description: YhhI Location: 4087581 -4087761 bp Feature: gene Location: 4088310-4089560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4088514-4089171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 408851 4-40891 71 bp Feature: domain Description: GIIM Note: maturase Location: 4089252-4089474 bp Feature: domain Description: GIIM Note: maturase Location: 4089252-4089474 bp Feature: gene Location: 4090007-4090224 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 4090028-4090223 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 4090028-4090223 bp Feature: gene Location: 4091317-4091820 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), FRG (smart00901), RVT-Retrons, HTH_XRE (smart00530), YhhI (COG5433), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808)

Seq: KE137315.1 Escherichia sp. KTE172 genomic scaffold acHaD-supercont1.2, whole genome shotgun sequence (2679 bp)
Overview 1 RT 1: 135-2244 bp Neighborhood of RT #1 [135, 2489] PHA02517 RVT-GII GIIM Feature: gene Location: 135-374 bp Feature: domain Description: PHA02517 Location: 138-309 bp Feature: domain Description: PHA02 517 Location: 138-309 bp Feature: gene Location: 966-2489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1239-1971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 39-1971 bp Feature: domain Description: GIIM Note: maturase Location: 2046-2244 bp Feature: domain Description: GIIM Note: maturase Location: 2 046-2 2 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: KE137311.1 Escherichia sp. KTE172 genomic scaffold acHaD-supercont1.1, whole genome shotgun sequence (122757 bp)
Overview 1 RT 1: 77166-82765 bp Neighborhood of RT #1 [77166, 83502] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc AdoMet_MTases DUF3560 Feature: gene Location: 77166-77399 bp Feature: domain Description: DUF905 Location: 77196-77394 bp Feature: domain Description: DUF905 Location: 77196-773 94 bp Feature: gene Location: 77457-77903 bp Feature: domain Description: PRK13732 Location: 77460-77901 bp Feature: domain Description: PRK13 73 2 Location: 77460-77901 bp Feature: gene Location: 78098-79999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78365-79196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783 65-79196 bp Feature: domain Description: Intron_maturas2 Location: 79310-79568 bp Feature: domain Description: Intron_maturas2 Location: 793 10-79568 bp Feature: domain Description: HNHc Note: nucleases Location: 79742-79904 bp Feature: domain Description: HNHc Note: nucleases Location: 79742-79904 bp Feature: gene Location: 81531-82094 bp Feature: domain Description: AdoMet_MTases Location: 81693-81993 bp Feature: domain Description: AdoMet_MTases Location: 81693 -81993 bp Feature: gene Location: 82141-83502 bp Feature: domain Description: DUF3560 Location: 82408-82765 bp Feature: domain Description: DUF3 560 Location: 82408-82765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AdoMet_MTases (cl17173), DUF3560 (pfam12083)