myRT

myRT report for GCA_000409125.1_gkp31v01

Download annotations/find similar RTs

Seq: ARPR01000057.1 Klebsiella pneumoniae UHKPC57 contig00125, whole genome shotgun sequence (3239 bp)
Overview 1 RT 1: 255-3239 bp Neighborhood of RT #1 [255, 3239] RVT-GII PRK10276 umuC Feature: gene Location: 255-1742 bp Ori: EPA91684.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660-1 350 bp Feature: gene Location: 2148-2579 bp Ori: EPA91685.1 Gene: umuD_2 Feature: domain Description: PRK10276 Location: 2199-2562 bp Feature: domain Description: PRK1 0276 Location: 21 99-2562 bp Feature: gene Location: 2579-3239 bp Ori: EPA91686.1 Feature: domain Description: umuC Location: 2582-3239 bp Feature: domain Description: umuC Location: 2582-3239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: ARPR01000112.1 Klebsiella pneumoniae UHKPC57 contig00130, whole genome shotgun sequence (3202 bp)
Overview 1 RT 1: 1-3115 bp Neighborhood of RT #1 [1, 3129] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 1-108 bp Ori: EPA90369.1 Feature: domain Description: PHA02517 Location: 4-109 bp Feature: domain Description: PHA02 517 Location: 4-109 bp Feature: gene Location: 261-1784 bp Ori: EPA90368.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-12 66 bp Feature: domain Description: GIIM Note: maturase Location: 1341-1539 bp Feature: domain Description: GIIM Note: maturase Location: 1341-1539 bp Feature: gene Location: 2857-3129 bp Ori: EPA90370.1 Feature: domain Description: InsE Location: 2866-3115 bp Feature: domain Description: InsE Location: 2 866-3115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: ARPR01000210.1 Klebsiella pneumoniae UHKPC57 contig00058, whole genome shotgun sequence (17583 bp)
Overview 1 RT 1: 431-7518 bp Neighborhood of RT #1 [431, 7535] PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 431-1294 bp Ori: EPA88164.1 Feature: domain Description: PRK09692 Location: 455-1292 bp Feature: domain Description: PRK09692 Location: 455-1292 bp Feature: gene Location: 2052-4124 bp Ori: EPA88153.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2454-2898 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2454-2898 bp Feature: gene Location: 4130-6724 bp Ori: EPA88160.1 Feature: domain Description: FimD Location: 4172-6713 bp Feature: domain Description: FimD Location: 4172-6713 bp Feature: gene Location: 6771-7535 bp Ori: EPA88151.1 Feature: domain Description: FimC Location: 6816-7518 bp Feature: domain Description: FimC Location: 6816-7518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: ARPR01000072.1 Klebsiella pneumoniae UHKPC57 contig00131, whole genome shotgun sequence (10550 bp)
Overview 1 RT 1: 4717-9757 bp Neighborhood of RT #1 [4717, 9759] umuC PRK10276 RVT-GII Antirestrict Feature: gene Location: 4717-5988 bp Ori: EPA91447.1 Feature: domain Description: umuC Location: 4720-5983 bp Feature: domain Description: umuC Location: 4 720-5983 bp Feature: gene Location: 5988-6413 bp Ori: EPA91449.1 Gene: umuD_3 Feature: domain Description: PRK10276 Location: 5991-6399 bp Feature: domain Description: PRK10276 Location: 5991-6399 bp Feature: gene Location: 6815-8350 bp Ori: EPA91452.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7220-7958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7220-7958 bp Feature: gene Location: 8584-8814 bp Feature: gene Location: 9334-9759 bp Ori: EPA91455.1 Feature: domain Description: Antirestrict Location: 9469-9757 bp Feature: domain Description: Antirestrict Location: 94 69-9757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)