myRT

myRT report for GCA_000410655.2_ASM41065v2

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Seq: AIBH01000044.1 Escherichia coli C639_08 C639_08_45, whole genome shotgun sequence (10666 bp)
Overview 1 RT 1: 397-3449 bp Neighborhood of RT #1 [397, 3634] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 397-1332 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 499-1099 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 499-1 099 bp Feature: gene Location: 1329-2981 bp Feature: domain Description: COG3950 Location: 1527-2946 bp Feature: domain Description: COG3950 Location: 1 527-2946 bp Feature: gene Location: 2984-3634 bp Feature: domain Description: TIGR02646 Location: 3050-3449 bp Feature: domain Description: TIGR02646 Location: 3050-3449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: AIBH01000118.1 Escherichia coli C639_08 C639_08_119, whole genome shotgun sequence (224279 bp)
Overview 1 RT 1: 174809-178809 bp Neighborhood of RT #1 [174809, 178817] DcuC RVT-GII Asparaginase_2 Feature: gene Location: 174809-176170 bp Feature: domain Description: DcuC Location: 174812-176144 bp Feature: domain Description: DcuC Location: 174812 -176144 bp Feature: gene Location: 176223-176594 bp Feature: gene Location: 176816-177262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177122-177224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17712 2 -1772 2 4 bp Feature: gene Location: 177310-177459 bp Feature: gene Location: 177786-178817 bp Feature: domain Description: Asparaginase_2 Location: 177876-178809 bp Feature: domain Description: Asparaginase_2 Location: 177876-178809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DcuC (TIGR00771), RVT-GII, Asparaginase_2 (pfam01112)

Seq: AIBH01000142.1 Escherichia coli C639_08 C639_08_143, whole genome shotgun sequence (87470 bp)
Overview 1 RT 1: 67305-71409 bp Neighborhood of RT #1 [67305, 71409] PRK13889 RVT-UG16 Feature: gene Location: 67305-67436 bp Feature: gene Location: 67469-68965 bp Feature: domain Description: PRK13889 Location: 67472-68075 bp Feature: domain Description: PRK13 889 Location: 67472-68075 bp Feature: gene Location: 69098-70582 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 69461-69869 bp Feature: RT Description: RVT-UG16 Note: UG16 RT Location: 69461-69869 bp Feature: gene Location: 70682-71245 bp Feature: gene Location: 71254-71409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-UG16