myRT

myRT report for GCA_000412855.1_2010K-2244_Ver1

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Seq: ARYU01000001.1 Salmonella enterica subsp. enterica serovar Poona str. 2010K-2244 NODE_1_length_115751_cov_67.091042, whole genome shotgun sequence (115821 bp)
Overview 1 RT 1: 82019-88155 bp Neighborhood of RT #1 [82019, 88337] PRK05658 PRK10201 RVT-UG11 5 Feature: gene Location: 82019-84001 bp Feature: domain Description: PRK05658 Location: 82157-83999 bp Feature: domain Description: PRK05658 Location: 821 57-83999 bp Feature: gene Location: 84125-84631 bp Feature: domain Description: PRK10201 Location: 84128-84626 bp Feature: domain Description: PRK1 0201 Location: 841 28-84626 bp Feature: gene Location: 84955-85257 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 84958-85069 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 84958-85069 bp Feature: gene Location: 86340-86507 bp Feature: gene Location: 86637-88337 bp Feature: domain Description: 5 Location: 87861-88155 bp Feature: domain Description: 5 Location: 87861 -881 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10201 (G/U mismatch-specific DNA glycosylase), RVT-UG11, 5 (PHA02596)

Seq: ARYU01000007.1 Salmonella enterica subsp. enterica serovar Poona str. 2010K-2244 NODE_7_length_78755_cov_75.280655, whole genome shotgun sequence (78825 bp)
Overview 1 RT 1: 7296-13186 bp Neighborhood of RT #1 [7296, 13188] HTH_Hin_like HTH_Tnp_1 RVT-Retrons TIR_2 Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 7296-7427 bp Feature: domain Description: HTH_Hin_like Location: 7302-7407 bp Feature: domain Description: HTH_Hin_like Location: 7302 -7407 bp Feature: gene Location: 7813-8250 bp Feature: domain Description: HTH_Tnp_1 Location: 7828-7945 bp Feature: domain Description: HTH_Tnp_1 Location: 782 8-7945 bp Feature: gene Location: 8300-9931 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8615-9212 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8615-92 12 bp Feature: domain Description: TIR_2 Location: 9536-9896 bp Feature: domain Description: TIR_2 Location: 9536-9896 bp Feature: gene Location: 10520-12853 bp Feature: domain Description: Prim_Zn_Ribbon Location: 10610-10718 bp Feature: domain Description: Prim_Zn_Ribbon Location: 10610-10718 bp Feature: domain Description: COG3378 Location: 11336-12845 bp Feature: domain Description: COG3378 Location: 11336-12 845 bp Feature: gene Location: 12868-13188 bp Feature: domain Description: DUF5375 Location: 12871-13186 bp Feature: domain Description: DUF5375 Location: 12 871-13186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Hin_like (cd00569), HTH_Tnp_1 (pfam01527), RVT-Retrons, TIR_2 (pfam13676), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345)