myRT

myRT report for GCA_000413415.1_Myro_odor_CCUG_12700_V1

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Seq: KE340320.1 Myroides odoratimimus CCUG 12700 genomic scaffold acHMV-supercont1.2, whole genome shotgun sequence (947082 bp)
Overview 1 RT 1: 406832-413732 bp 2 RT 2: 940134-942958 bp Neighborhood of RT #1 [406832, 413746] RsmI RVT-GII GIIM YhfA recJ Neighborhood of RT #2 [940134, 943116] Y1_Tnp RVT-GII GIIM Feature: gene Location: 406832-408232 bp Feature: gene Location: 408235-408909 bp Ori: EPH10624.1 Feature: domain Description: RsmI Location: 408238-408904 bp Feature: domain Description: RsmI Location: 408238-408904 bp Feature: gene Location: 409444-410835 bp Ori: EPH10625.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409774-410392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 409774-41 0392 bp Feature: domain Description: GIIM Note: maturase Location: 410452-410677 bp Feature: domain Description: GIIM Note: maturase Location: 41 0452-41 0677 bp Feature: gene Location: 411617-412039 bp Ori: EPH10626.1 Feature: domain Description: YhfA Location: 411629-412022 bp Feature: domain Description: YhfA Location: 41 1 629-41 2022 bp Feature: gene Location: 412043-413746 bp Ori: EPH10627.1 Feature: domain Description: recJ Location: 412118-413732 bp Feature: domain Description: recJ Location: 41 21 1 8-41 3732 bp Feature: gene Location: 940134-940655 bp Feature: gene Location: 940776-941207 bp Ori: EPH09046.1 Feature: domain Description: Y1_Tnp Location: 940809-941163 bp Feature: domain Description: Y1 _Tnp Location: 940809-941 1 63 bp Feature: gene Location: 941725-943116 bp Ori: EPH09047.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942055-942673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 942055-942673 bp Feature: domain Description: GIIM Note: maturase Location: 942733-942958 bp Feature: domain Description: GIIM Note: maturase Location: 942733-942958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RsmI (COG0313), RVT-GII, GIIM (pfam08388), YhfA (COG1765), recJ (TIGR00644), Y1_Tnp (pfam01797)

Seq: KE340319.1 Myroides odoratimimus CCUG 12700 genomic scaffold acHMV-supercont1.1, whole genome shotgun sequence (2327542 bp)
Overview 1 RT 1: 747379-751915 bp 2 RT 2: 1018043-1025158 bp Neighborhood of RT #1 [747379, 751962] DDE_Tnp_ISL3 COG4585 RVT-GII CHU_C PorP_SprF Neighborhood of RT #2 [1018043, 1025253] YdiL PRK13746 RVT-UG12 cbb3_Oxidase_I Feature: gene Location: 747379-748185 bp Ori: EPH13445.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 747400-748165 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 747400-748165 bp Feature: gene Location: 748289-748567 bp Ori: EPH13446.1 Feature: domain Description: COG4585 Location: 748301-748550 bp Feature: domain Description: COG4585 Location: 748301-748550 bp Feature: gene Location: 748564-749052 bp Ori: EPH13447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 748897-749032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 748897-749032 bp Feature: gene Location: 749702-751018 bp Ori: EPH13448.1 Feature: domain Description: CHU_C Location: 750701-750959 bp Feature: domain Description: CHU_C Location: 750701-750959 bp Feature: gene Location: 751030-751962 bp Ori: EPH13449.1 Feature: domain Description: PorP_SprF Location: 751102-751915 bp Feature: domain Description: PorP_SprF Location: 751102 -751915 bp Feature: gene Location: 1018043-1018735 bp Ori: EPH13171.1 Feature: domain Description: YdiL Location: 1018082-1018697 bp Feature: domain Description: YdiL Location: 1018082 -1018697 bp Feature: gene Location: 1019148-1019918 bp Ori: EPH13172.1 Feature: domain Description: PRK13746 Location: 1019160-1019910 bp Feature: domain Description: PRK13746 Location: 1019160-1019910 bp Feature: gene Location: 1020796-1022421 bp Ori: EPH13173.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 1021171-1021606 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 102 1171-102 1606 bp Feature: gene Location: 1022479-1022610 bp Feature: gene Location: 1023118-1025253 bp Ori: EPH13175.1 Feature: domain Description: cbb3_Oxidase_I Location: 1023814-1025158 bp Feature: domain Description: cbb3_Oxidase_I Location: 102 3814-102 5158 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISL3 (pfam01610), COG4585 (Signal transduction histidine kinase ), RVT-GII, CHU_C (pfam13585), PorP_SprF (pfam11751), YdiL (COG1266), PRK13746 (aminoglycoside resistance protein; Provisional), RVT-UG12, cbb3_Oxidase_I (cd01661)