myRT

myRT report for GCA_000415485.1_E2265_1

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Seq: KE353187.1 Escherichia coli E2265 genomic scaffold scaffold211_G, whole genome shotgun sequence (56765 bp)
Overview 1 RT 1: 9810-14568 bp Neighborhood of RT #1 [9810, 14633] LysM IAT_beta PRK15318 Invasin_D3 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 9810-11540 bp Ori: EPH51040.1 Feature: domain Description: LysM Location: 9903-10041 bp Feature: domain Description: LysM Location: 9903-1 0041 bp Feature: domain Description: IAT_beta Location: 10122-10947 bp Feature: domain Description: IAT_beta Location: 1 01 22-1 0947 bp Feature: domain Description: PRK15318 Location: 11148-11271 bp Feature: domain Description: PRK1 531 8 Location: 1 1 1 48-1 1 271 bp Feature: domain Description: Invasin_D3 Location: 11286-11523 bp Feature: domain Description: Invasin_D3 Location: 1 1 286-1 1 523 bp Feature: gene Location: 11542-11976 bp Ori: EPH51041.1 Feature: domain Description: PHA02517 Location: 11545-11968 bp Feature: domain Description: PHA0251 7 Location: 1 1 545-1 1 968 bp Feature: gene Location: 12099-13622 bp Ori: EPH51042.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12372-13104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2372-1 31 04 bp Feature: domain Description: GIIM Note: maturase Location: 13179-13377 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 79-1 3377 bp Feature: gene Location: 13804-13917 bp Feature: gene Location: 14214-14633 bp Ori: EPH51044.1 Feature: domain Description: PHA02517 Location: 14229-14568 bp Feature: domain Description: PHA0251 7 Location: 1 4229-1 4568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysM (smart00257), IAT_beta (pfam11924), PRK15318 (intimin-like protein SinH; Provisional), Invasin_D3 (pfam09134), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: KE353192.1 Escherichia coli E2265 genomic scaffold scaffold216_G, whole genome shotgun sequence (25251 bp)
Overview 1 RT 1: 20912-24545 bp Neighborhood of RT #1 [20912, 25081] prfC RVT-UG17 Feature: gene Location: 20912-22486 bp Ori: EPH46997.1 Feature: domain Description: prfC Location: 20921-22484 bp Feature: domain Description: prfC Location: 2 092 1-2 2 484 bp Feature: gene Location: 22439-22603 bp Feature: gene Location: 23711-25081 bp Ori: EPH46999.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 23939-24545 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 3939-2 4545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), RVT-UG17

Seq: KE353104.1 Escherichia coli E2265 genomic scaffold scaffold137_G, whole genome shotgun sequence (4390 bp)
Overview 1 RT 1: 1156-3327 bp Neighborhood of RT #1 [1156, 3327] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1156-2823 bp Ori: EPH50449.1 Feature: domain Description: RVT_N Location: 1204-1441 bp Feature: domain Description: RVT_N Location: 1204-1441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492-2134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1492-213 4 bp Feature: domain Description: GIIM Note: maturase Location: 2185-2419 bp Feature: domain Description: GIIM Note: maturase Location: 2185-2419 bp Feature: domain Description: HNHc Note: nucleases Location: 2629-2788 bp Feature: domain Description: HNHc Note: nucleases Location: 2629-2788 bp Feature: gene Location: 2967-3122 bp Feature: gene Location: 3136-3327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)