myRT

myRT report for GCA_000416275.1_ASM41627v1

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Seq: ASZJ01000185.1 Osedax symbiont Rs1 5221_190, whole genome shotgun sequence (64355 bp)
Overview 1 RT 1: 3363-9627 bp Neighborhood of RT #1 [3363, 9635] COG4933 AAA_17 RVT_N RVT-GII GIIM degP_htrA_DO smpB Feature: gene Location: 3363-3779 bp Feature: domain Description: COG4933 Location: 3384-3729 bp Feature: domain Description: COG4933 Location: 3384-3729 bp Feature: gene Location: 3776-4324 bp Feature: domain Description: AAA_17 Location: 3806-4160 bp Feature: domain Description: AAA_1 7 Location: 3806-41 60 bp Feature: gene Location: 4599-6089 bp Feature: RT Description: RVT_N Location: 4644-4887 bp Feature: RT Description: RVT_N Location: 4644-4887 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4932-5556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4932-5556 bp Feature: domain Description: GIIM Note: maturase Location: 5607-5841 bp Feature: domain Description: GIIM Note: maturase Location: 5607-5841 bp Feature: gene Location: 7536-8906 bp Feature: domain Description: degP_htrA_DO Location: 7641-8898 bp Feature: domain Description: degP_htrA_DO Location: 7641 -8898 bp Feature: gene Location: 9159-9635 bp Feature: domain Description: smpB Location: 9192-9627 bp Feature: domain Description: smpB Location: 91 92-9627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4933 (Predicted transcriptional regulator, contains an HTH and PUA-like domains ), AAA_17 (pfam13207), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), degP_htrA_DO (TIGR02037), smpB (TIGR00086)

Seq: ASZJ01000218.1 Osedax symbiont Rs1 5221_223, whole genome shotgun sequence (3727 bp)
Overview 1 RT 1: 236-3437 bp Neighborhood of RT #1 [236, 3619] Y1_Tnp Y1_Tnp RVT-GII Feature: gene Location: 236-1249 bp Feature: domain Description: Y1_Tnp Location: 380-482 bp Feature: domain Description: Y1_Tnp Location: 380-482 bp Feature: domain Description: Y1_Tnp Location: 641-791 bp Feature: domain Description: Y1_Tnp Location: 641-791 bp Feature: gene Location: 2883-3008 bp Feature: gene Location: 3017-3619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3041-3437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3041-3437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), RVT-GII

Seq: ASZJ01000221.1 Osedax symbiont Rs1 5221_226, whole genome shotgun sequence (2644 bp)
Overview 1 RT 1: 136-2336 bp Neighborhood of RT #1 [136, 2344] RVT_N RVT-GII GIIM Feature: gene Location: 136-681 bp Feature: gene Location: 1169-2344 bp Feature: RT Description: RVT_N Location: 1217-1460 bp Feature: RT Description: RVT_N Location: 1217-1460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1505-2129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1505-2129 bp Feature: domain Description: GIIM Note: maturase Location: 2189-2336 bp Feature: domain Description: GIIM Note: maturase Location: 2189-23 3 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: ASZJ01000091.1 Osedax symbiont Rs1 5221_96, whole genome shotgun sequence (6636 bp)
Overview 1 RT 1: 116-3582 bp Neighborhood of RT #1 [116, 3599] RVT_N RVT-GII GIIM ManC Feature: gene Location: 116-247 bp Feature: gene Location: 844-2040 bp Feature: RT Description: RVT_N Location: 880-982 bp Feature: RT Description: RVT_N Location: 880-982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1027-1639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1027-1639 bp Feature: domain Description: GIIM Note: maturase Location: 1690-1924 bp Feature: domain Description: GIIM Note: maturase Location: 1690-1924 bp Feature: gene Location: 2765-3115 bp Feature: gene Location: 3288-3599 bp Feature: domain Description: ManC Location: 3303-3582 bp Feature: domain Description: ManC Location: 3303-3582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ManC (COG0662), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)