myRT

myRT report for GCA_000416345.1_PstB1SMN1_1.0

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Seq: AMVM01000027.1 Pseudomonas stutzeri B1SMN1 contig00027, whole genome shotgun sequence (44355 bp)
Overview 1 RT 1: 1-2989 bp Neighborhood of RT #1 [1, 2994] RVT_N RVT-GII IS5 purU Feature: gene Location: 1-724 bp Feature: RT Description: RVT_N Location: 82-307 bp Feature: RT Description: RVT_N Location: 82-307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358-724 bp Feature: gene Location: 1317-1850 bp Feature: domain Description: IS5 Location: 1503-1839 bp Feature: domain Description: IS5 Location: 1 503-1 839 bp Feature: gene Location: 2143-2994 bp Feature: domain Description: purU Location: 2149-2989 bp Feature: domain Description: purU Location: 21 49-2989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, purU (PRK13010)

Seq: AMVM01000020.1 Pseudomonas stutzeri B1SMN1 contig00020, whole genome shotgun sequence (56118 bp)
Overview 1 RT 1: 28430-33300 bp Neighborhood of RT #1 [28430, 33311] KfrB HTH_XRE RVT-GII GIIM PinE PinE Feature: gene Location: 28430-28864 bp Feature: domain Description: KfrB Location: 28487-28670 bp Feature: domain Description: KfrB Location: 2 8487-2 8670 bp Feature: gene Location: 28861-29076 bp Feature: domain Description: HTH_XRE Location: 28900-29023 bp Feature: domain Description: HTH_XRE Location: 2 8900-2 902 3 bp Feature: gene Location: 29649-31064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30006-30621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30006-3062 1 bp Feature: domain Description: GIIM Note: maturase Location: 30678-30903 bp Feature: domain Description: GIIM Note: maturase Location: 30678-30903 bp Feature: gene Location: 31397-31954 bp Feature: domain Description: PinE Location: 31400-31937 bp Feature: domain Description: PinE Location: 31400-31937 bp Feature: gene Location: 32745-33311 bp Feature: domain Description: PinE Location: 32748-33300 bp Feature: domain Description: PinE Location: 32 748-33300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KfrB (pfam18790), HTH_XRE (smart00530), RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: AMVM01000060.1 Pseudomonas stutzeri B1SMN1 contig00060, whole genome shotgun sequence (1925 bp)
Overview 1 RT 1: 72-1326 bp Neighborhood of RT #1 [72, 1493] RVT-GII GIIM Feature: gene Location: 72-1493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1044 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1326 bp Feature: domain Description: GIIM Note: maturase Location: 1098-13 26 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AMVM01000062.1 Pseudomonas stutzeri B1SMN1 contig00062, whole genome shotgun sequence (1845 bp)
Overview 1 RT 1: 514-1687 bp Neighborhood of RT #1 [514, 1782] RVT-GII GIIM Feature: gene Location: 514-1782 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727-1381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 727-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1462-1687 bp Feature: domain Description: GIIM Note: maturase Location: 14 62-1687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AMVM01000002.1 Pseudomonas stutzeri B1SMN1 contig00002, whole genome shotgun sequence (576135 bp)
Overview 1 RT 1: 126293-134318 bp Neighborhood of RT #1 [126293, 134326] PRK01766 PRK00257 RVT_N RVT-GII YkfC HNHc PRK07994 PRK00153 Feature: gene Location: 126293-127687 bp Feature: domain Description: PRK01766 Location: 126317-127661 bp Feature: domain Description: PRK01766 Location: 126317-127661 bp Feature: gene Location: 127809-128954 bp Feature: domain Description: PRK00257 Location: 127812-128946 bp Feature: domain Description: PRK0025 7 Location: 127812-128946 bp Feature: gene Location: 130070-131809 bp Feature: RT Description: RVT_N Location: 130130-130373 bp Feature: RT Description: RVT_N Location: 130130-130373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130421-131072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130421-131072 bp Feature: domain Description: YkfC Location: 131237-131435 bp Feature: domain Description: YkfC Location: 131237-131435 bp Feature: domain Description: HNHc Note: nucleases Location: 131606-131762 bp Feature: domain Description: HNHc Note: nucleases Location: 131606-131762 bp Feature: gene Location: 132013-133980 bp Feature: domain Description: PRK07994 Location: 132016-133963 bp Feature: domain Description: PRK07994 Location: 132016-133963 bp Feature: gene Location: 134000-134326 bp Feature: domain Description: PRK00153 Location: 134006-134318 bp Feature: domain Description: PRK0015 3 Location: 134006-134318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK01766 (multidrug efflux protein; Reviewed), PRK00257 (4-phosphoerythronate dehydrogenase PdxB), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK07994 (DNA polymerase III subunits gamma and tau; Validated), PRK00153 (YbaB/EbfC family nucleoid-associated protein)

Seq: AMVM01000067.1 Pseudomonas stutzeri B1SMN1 contig00067, whole genome shotgun sequence (1319 bp)
Overview 1 RT 1: 596-1319 bp Neighborhood of RT #1 [596, 1319] RVT_N RVT-GII Feature: gene Location: 596-1319 bp Feature: RT Description: RVT_N Location: 677-902 bp Feature: RT Description: RVT_N Location: 6 77-902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953-1319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953-1319 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: AMVM01000019.1 Pseudomonas stutzeri B1SMN1 contig00019, whole genome shotgun sequence (84421 bp)
Overview 1 RT 1: 50733-56182 bp Neighborhood of RT #1 [50733, 56214] IS5 RVT-GII GIIM IS5 RfaL Feature: gene Location: 50733-50939 bp Feature: gene Location: 51301-51840 bp Feature: domain Description: IS5 Location: 51490-51817 bp Feature: domain Description: IS5 Location: 51490-51817 bp Feature: gene Location: 52333-53601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52546-53203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52546-53203 bp Feature: domain Description: GIIM Note: maturase Location: 53281-53503 bp Feature: domain Description: GIIM Note: maturase Location: 53281-53503 bp Feature: gene Location: 53709-54131 bp Feature: domain Description: IS5 Location: 53712-54102 bp Feature: domain Description: IS5 Location: 537 12-54102 bp Feature: gene Location: 54859-56214 bp Feature: domain Description: RfaL Location: 54964-56182 bp Feature: domain Description: RfaL Location: 54964-56182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT-GII, GIIM (pfam08388), RfaL (COG3307)