myRT

myRT report for GCA_000416445.1_Velvet_for_BPAC1100

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Seq: ASXI01000024.1 Paraburkholderia phenoliruptrix AC1100 contig024, whole genome shotgun sequence (48713 bp)
Overview 1 RT 1: 2068-5486 bp Neighborhood of RT #1 [2068, 5959] RVT-GII GIIM phage_rel_nuc Feature: gene Location: 2068-2343 bp Feature: gene Location: 2572-2784 bp Feature: gene Location: 2800-4167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3127-3748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 27-3748 bp Feature: domain Description: GIIM Note: maturase Location: 3799-4009 bp Feature: domain Description: GIIM Note: maturase Location: 3799-4009 bp Feature: gene Location: 4485-4841 bp Feature: gene Location: 5006-5959 bp Feature: domain Description: phage_rel_nuc Location: 5024-5486 bp Feature: domain Description: phage_rel_nuc Location: 5024-5486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), phage_rel_nuc (TIGR03033)

Seq: ASXI01000044.1 Paraburkholderia phenoliruptrix AC1100 contig044, whole genome shotgun sequence (40885 bp)
Overview 1 RT 1: 35946-40518 bp Neighborhood of RT #1 [35946, 40661] Prim_Zn_Ribbon Toprim_3 RVT-GII GIIM IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Feature: gene Location: 35946-37019 bp Feature: domain Description: Prim_Zn_Ribbon Location: 36078-36186 bp Feature: domain Description: Prim_Zn_Ribbon Location: 36078-36186 bp Feature: domain Description: Toprim_3 Location: 36717-37002 bp Feature: domain Description: Toprim_3 Location: 36717-37002 bp Feature: gene Location: 37214-37381 bp Feature: gene Location: 37470-38846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37815-38430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37815-38430 bp Feature: domain Description: GIIM Note: maturase Location: 38487-38688 bp Feature: domain Description: GIIM Note: maturase Location: 38487-38688 bp Feature: gene Location: 39055-39810 bp Feature: domain Description: IstB_IS21_ATP Location: 39127-39211 bp Feature: domain Description: IstB_IS2 1_ATP Location: 3912 7-392 11 bp Feature: domain Description: IstB_IS21 Location: 39217-39745 bp Feature: domain Description: IstB_IS2 1 Location: 392 17-39745 bp Feature: gene Location: 39825-40661 bp Feature: domain Description: COG4584 Location: 39831-40035 bp Feature: domain Description: COG4584 Location: 39831-40035 bp Feature: domain Description: COG4584 Location: 40122-40518 bp Feature: domain Description: COG4584 Location: 4012 2 -40518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), Toprim_3 (pfam13362), RVT-GII, GIIM (pfam08388), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase )

Seq: ASXI01000088.1 Paraburkholderia phenoliruptrix AC1100 contig088, whole genome shotgun sequence (16953 bp)
Overview 1 RT 1: 12645-16635 bp Neighborhood of RT #1 [12645, 16952] LysR gram_neg_porins RVT_N RVT-GII YkfC Feature: gene Location: 12645-13532 bp Feature: domain Description: LysR Location: 12654-13521 bp Feature: domain Description: LysR Location: 12654-13 521 bp Feature: gene Location: 13947-15026 bp Feature: domain Description: gram_neg_porins Location: 14019-15024 bp Feature: domain Description: gram_neg_porins Location: 14019-15024 bp Feature: gene Location: 15267-16952 bp Feature: RT Description: RVT_N Location: 15342-15585 bp Feature: RT Description: RVT_N Location: 153 42-15585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15630-16266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1563 0-16266 bp Feature: domain Description: YkfC Location: 16401-16635 bp Feature: domain Description: YkfC Location: 16401-1663 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), gram_neg_porins (cd00342), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: ASXI01000265.1 Paraburkholderia phenoliruptrix AC1100 contig270, whole genome shotgun sequence (70723 bp)
Overview 1 RT 1: 28741-34746 bp Neighborhood of RT #1 [28741, 34763] PLN02820 PccA RVT-GII FkbR2 Feature: gene Location: 28741-30333 bp Feature: domain Description: PLN02820 Location: 28747-30298 bp Feature: domain Description: PLN02820 Location: 2874 7-30298 bp Feature: gene Location: 30338-32329 bp Feature: domain Description: PccA Location: 30341-32321 bp Feature: domain Description: PccA Location: 3034 1-32321 bp Feature: gene Location: 32392-33900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32818-33508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32818-33508 bp Feature: gene Location: 33913-34131 bp Feature: gene Location: 34299-34763 bp Feature: domain Description: FkbR2 Location: 34308-34746 bp Feature: domain Description: FkbR2 Location: 34 308-34 74 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLN02820 (3-methylcrotonyl-CoA carboxylase, beta chain), PccA (COG4770), RVT-GII, FkbR2 (cd03451)