myRT

myRT report for GCA_000416485.1_ASM41648v1

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Seq: AOJS01000177.1 Pseudomonas syringae pv. actinidiae ICMP 19071 scaffold131, whole genome shotgun sequence (17171 bp)
Overview 1 RT 1: 1-3135 bp Neighborhood of RT #1 [1, 3605] RVT-GII Acetyltransf_1 PrtC DUF3656 Feature: gene Location: 1-443 bp Ori: EPM59741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-442 bp Feature: gene Location: 986-1552 bp Ori: EPM59742.1 Feature: domain Description: Acetyltransf_1 Location: 1202-1490 bp Feature: domain Description: Acetyltransf_1 Location: 1 202-1 490 bp Feature: gene Location: 1599-3605 bp Ori: EPM59743.1 Feature: domain Description: PrtC Location: 1617-2508 bp Feature: domain Description: PrtC Location: 1 61 7-2508 bp Feature: domain Description: DUF3656 Location: 2796-3135 bp Feature: domain Description: DUF3656 Location: 2796-31 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Acetyltransf_1 (pfam00583), PrtC (COG0826), DUF3656 (pfam12392)

Seq: AOJS01000156.1 Pseudomonas syringae pv. actinidiae ICMP 19071 scaffold2, whole genome shotgun sequence (100822 bp)
Overview 1 RT 1: 71677-80867 bp Neighborhood of RT #1 [71677, 80872] CheY SpoIIE HATPase_RsbW-like Hpt RVT-GII GIIM CitB Feature: gene Location: 71677-73383 bp Ori: EPM60304.1 Feature: domain Description: CheY Location: 71698-72049 bp Feature: domain Description: CheY Location: 71698-72 049 bp Feature: domain Description: SpoIIE Location: 72262-72820 bp Feature: domain Description: SpoIIE Location: 72 2 62 -72 82 0 bp Feature: domain Description: HATPase_RsbW-like Location: 73015-73369 bp Feature: domain Description: HATPase_RsbW-like Location: 73015-73369 bp Feature: gene Location: 73417-73773 bp Ori: EPM60305.1 Feature: domain Description: Hpt Location: 73489-73678 bp Feature: domain Description: Hpt Location: 73489-73678 bp Feature: gene Location: 75638-76642 bp Ori: EPM60306.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75689-76268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75689-762 68 bp Feature: domain Description: GIIM Note: maturase Location: 76325-76553 bp Feature: domain Description: GIIM Note: maturase Location: 7632 5-76553 bp Feature: gene Location: 76810-79080 bp Feature: gene Location: 80276-80872 bp Ori: EPM60308.1 Feature: domain Description: CitB Location: 80291-80867 bp Feature: domain Description: CitB Location: 802 91-80867 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CheY (COG0784), SpoIIE (pfam07228), HATPase_RsbW-like (cd16936), Hpt (pfam01627), RVT-GII, GIIM (pfam08388), CitB (TIGR02484)

Seq: AOJS01000060.1 Pseudomonas syringae pv. actinidiae ICMP 19071 scaffold30, whole genome shotgun sequence (41537 bp)
Overview 1 RT 1: 24226-31069 bp 2 RT 2: 39146-41352 bp Neighborhood of RT #1 [24226, 31069] Phenol_MetA_deg Mrr_cat_2 RVT-UG2 COG4951 SSL2 Neighborhood of RT #2 [39146, 41352] TAS_TAS_TAS_TIGR02293 RVT-Retrons Feature: gene Location: 24226-25113 bp Ori: EPM62074.1 Feature: domain Description: Phenol_MetA_deg Location: 24397-25099 bp Feature: domain Description: Phenol_MetA_deg Location: 243 97-25099 bp Feature: gene Location: 25293-25745 bp Ori: EPM62075.1 Feature: domain Description: Mrr_cat_2 Location: 25398-25647 bp Feature: domain Description: Mrr_cat_2 Location: 253 98-25647 bp Feature: gene Location: 26242-27120 bp Ori: EPM62076.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 26245-26821 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 26245-26821 bp Feature: gene Location: 28154-30541 bp Ori: EPM62077.1 Feature: domain Description: COG4951 Location: 28163-29300 bp Feature: domain Description: COG4951 Location: 28163 -293 00 bp Feature: domain Description: SSL2 Location: 29336-30488 bp Feature: domain Description: SSL2 Location: 293 3 6-3 0488 bp Feature: gene Location: 30713-31069 bp Feature: gene Location: 39146-39532 bp Ori: EPM62086.1 Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 39200-39530 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 3 9200-3 953 0 bp Feature: gene Location: 39760-39990 bp Feature: gene Location: 39991-41034 bp Ori: EPM62088.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40126-40696 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40126-40696 bp Feature: gene Location: 41110-41352 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phenol_MetA_deg (pfam13557), Mrr_cat_2 (pfam13156), RVT-UG2, COG4951 (Uncharacterized protein ), SSL2 (COG1061), TAS_TAS_TAS_TIGR02293, RVT-Retrons

Seq: AOJS01000158.1 Pseudomonas syringae pv. actinidiae ICMP 19071 scaffold11, whole genome shotgun sequence (59920 bp)
Overview 1 RT 1: 42386-49864 bp Neighborhood of RT #1 [42386, 49869] 2A0305 PRK00230 RVT-GII GIIM YejF YejE Feature: gene Location: 42386-43750 bp Ori: EPM60205.1 Feature: domain Description: 2A0305 Location: 42392-43724 bp Feature: domain Description: 2A0305 Location: 4 2392-4 3724 bp Feature: gene Location: 44042-44740 bp Ori: EPM60206.1 Feature: domain Description: PRK00230 Location: 44057-44735 bp Feature: domain Description: PRK00230 Location: 4 4 057-4 4 735 bp Feature: gene Location: 45432-46694 bp Ori: EPM60207.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45672-46287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 5672-4 6287 bp Feature: domain Description: GIIM Note: maturase Location: 46332-46542 bp Feature: domain Description: GIIM Note: maturase Location: 4 6332-4 654 2 bp Feature: gene Location: 47268-48845 bp Ori: EPM60208.1 Feature: domain Description: YejF Location: 47274-48837 bp Feature: domain Description: YejF Location: 4 7274 -4 8837 bp Feature: gene Location: 48847-49869 bp Ori: EPM60209.1 Feature: domain Description: YejE Location: 48856-49864 bp Feature: domain Description: YejE Location: 4 8856-4 9864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0305 (TIGR00908), PRK00230 (orotidine-5'-phosphate decarboxylase), RVT-GII, GIIM (pfam08388), YejF (COG4172), YejE (COG4239)