myRT

myRT report for GCA_000416585.1_ASM41658v1

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Seq: AOKM01000186.1 Pseudomonas syringae pv. actinidiae ICMP 19101 scaffold37, whole genome shotgun sequence (16166 bp)
Overview 1 RT 1: 9818-16125 bp Neighborhood of RT #1 [9818, 16166] trans_reg_C ComA-like_MBL-fold RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 9818-10141 bp Ori: EPN86087.1 Feature: domain Description: trans_reg_C Location: 9842-10052 bp Feature: domain Description: trans_reg_C Location: 9842-1 0052 bp Feature: gene Location: 10948-12366 bp Ori: EPN86088.1 Feature: domain Description: ComA-like_MBL-fold Location: 11497-11983 bp Feature: domain Description: ComA-like_MBL-fold Location: 1 1 497-1 1 983 bp Feature: gene Location: 12810-14519 bp Ori: EPN86089.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12963-13560 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 2963-1 3560 bp Feature: gene Location: 14943-16166 bp Ori: EPN86090.1 Feature: domain Description: COG3666 Location: 14985-15426 bp Feature: domain Description: COG3666 Location: 1 4985-1 5426 bp Feature: domain Description: DDE_Tnp_1_6 Location: 15903-16125 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 5903-1 61 25 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT trans_reg_C (cd00383), ComA-like_MBL-fold (cd07731), RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: AOKM01000232.1 Pseudomonas syringae pv. actinidiae ICMP 19101 scaffold372, whole genome shotgun sequence (4802 bp)
Overview 1 RT 1: 313-3217 bp Neighborhood of RT #1 [313, 3217] RVT-UG9 UvrD_C Feature: gene Location: 313-1224 bp Ori: EPN85877.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 316-472 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 316-472 bp Feature: gene Location: 1322-1912 bp Ori: EPN85878.1 Feature: domain Description: UvrD_C Location: 1646-1841 bp Feature: domain Description: UvrD_C Location: 1646-1841 bp Feature: gene Location: 2273-3217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: AOKM01001499.1 Pseudomonas syringae pv. actinidiae ICMP 19101 scaffold249, whole genome shotgun sequence (6464 bp)
Overview 1 RT 1: 551-6459 bp Neighborhood of RT #1 [551, 6464] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 ModC Feature: gene Location: 551-739 bp Feature: gene Location: 1141-1776 bp Ori: EPN67556.1 Feature: domain Description: DUF2625 Location: 1153-1741 bp Feature: domain Description: DUF2625 Location: 1153 -1741 bp Feature: gene Location: 2214-4049 bp Ori: EPN67557.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2475-3288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2475-3 288 bp Feature: domain Description: Intron_maturas2 Location: 3384-3699 bp Feature: domain Description: Intron_maturas2 Location: 3 3 84-3 699 bp Feature: domain Description: HNHc Note: nucleases Location: 3822-3987 bp Feature: domain Description: HNHc Note: nucleases Location: 3 822-3 987 bp Feature: gene Location: 4880-5935 bp Ori: EPN67558.1 Feature: domain Description: Top1 Location: 4913-5927 bp Feature: domain Description: Top1 Location: 4913 -5927 bp Feature: gene Location: 6024-6464 bp Ori: EPN67559.1 Feature: domain Description: ModC Location: 6030-6459 bp Feature: domain Description: ModC Location: 603 0-6459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), ModC (COG4149)

Seq: AOKM01000038.1 Pseudomonas syringae pv. actinidiae ICMP 19101 scaffold558, whole genome shotgun sequence (3411 bp)
Overview 1 RT 1: 1168-3188 bp Neighborhood of RT #1 [1168, 3325] TnpB_IS66 RVT-GII GIIM TnpB_IS66 Feature: gene Location: 1168-1371 bp Ori: EPN86641.1 Feature: domain Description: TnpB_IS66 Location: 1192-1336 bp Feature: domain Description: TnpB_IS66 Location: 1192-1336 bp Feature: gene Location: 1405-2673 bp Ori: EPN86642.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1609-2266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1609-2266 bp Feature: domain Description: GIIM Note: maturase Location: 2344-2566 bp Feature: domain Description: GIIM Note: maturase Location: 234 4 -2566 bp Feature: gene Location: 3080-3325 bp Ori: EPN86643.1 Feature: domain Description: TnpB_IS66 Location: 3110-3188 bp Feature: domain Description: TnpB_IS66 Location: 3110-3188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388)

Seq: AOKM01001791.1 Pseudomonas syringae pv. actinidiae ICMP 19101 scaffold1063, whole genome shotgun sequence (1339 bp)
Overview 1 RT 1: 88-1198 bp Neighborhood of RT #1 [88, 1339] RVT-GII GIIM Feature: gene Location: 88-1339 bp Ori: EPN64979.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)