myRT

myRT report for GCA_000416605.1_ASM41660v1

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Seq: AOKL01002342.1 Pseudomonas syringae pv. actinidiae ICMP 19079 scaffold23, whole genome shotgun sequence (15138 bp)
Overview 1 RT 1: 46-2517 bp Neighborhood of RT #1 [46, 3476] COG3666 DDE_Tnp_1_6 RVT-Retrons Feature: gene Location: 46-1269 bp Ori: EPN56426.1 Feature: domain Description: COG3666 Location: 88-529 bp Feature: domain Description: COG3666 Location: 88-529 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1006-1228 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 006-1 228 bp Feature: gene Location: 1268-1354 bp Feature: gene Location: 1767-3476 bp Ori: EPN56428.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1920-2517 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 920-251 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons

Seq: AOKL01000411.1 Pseudomonas syringae pv. actinidiae ICMP 19079 scaffold170, whole genome shotgun sequence (6447 bp)
Overview 1 RT 1: 1-5852 bp Neighborhood of RT #1 [1, 5852] Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 1-379 bp Feature: gene Location: 468-1523 bp Ori: EPN69520.1 Feature: domain Description: Top1 Location: 501-1515 bp Feature: domain Description: Top1 Location: 501-1515 bp Feature: gene Location: 2354-4189 bp Ori: EPN69521.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2615-3428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 615-342 8 bp Feature: domain Description: Intron_maturas2 Location: 3524-3839 bp Feature: domain Description: Intron_maturas2 Location: 352 4-3839 bp Feature: domain Description: HNHc Note: nucleases Location: 3962-4127 bp Feature: domain Description: HNHc Note: nucleases Location: 3962 -412 7 bp Feature: gene Location: 4627-5391 bp Ori: EPN69522.1 Feature: domain Description: DUF2625 Location: 4768-5356 bp Feature: domain Description: DUF2 62 5 Location: 4768-5356 bp Feature: gene Location: 5664-5852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: AOKL01002638.1 Pseudomonas syringae pv. actinidiae ICMP 19079 scaffold1792, whole genome shotgun sequence (682 bp)
Overview 1 RT 1: 88-679 bp Neighborhood of RT #1 [88, 682] RVT-GII Feature: gene Location: 88-682 bp Ori: EPN54828.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 28-679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AOKL01002269.1 Pseudomonas syringae pv. actinidiae ICMP 19079 scaffold288, whole genome shotgun sequence (4810 bp)
Overview 1 RT 1: 1594-3746 bp Neighborhood of RT #1 [1594, 4498] UvrD_C RVT-UG9 Feature: gene Location: 1594-2538 bp Feature: gene Location: 2899-3489 bp Ori: EPN56880.1 Feature: domain Description: UvrD_C Location: 3223-3418 bp Feature: domain Description: UvrD_C Location: 3223-34 18 bp Feature: gene Location: 3587-4498 bp Ori: EPN56881.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3590-3746 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3590-374 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: AOKL01001535.1 Pseudomonas syringae pv. actinidiae ICMP 19079 scaffold1183, whole genome shotgun sequence (1402 bp)
Overview 1 RT 1: 1-1063 bp Neighborhood of RT #1 [1, 1197] RVT-GII GIIM Feature: gene Location: 1-1197 bp Ori: EPN61122.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 166-778 bp Feature: domain Description: GIIM Note: maturase Location: 835-1063 bp Feature: domain Description: GIIM Note: maturase Location: 835 -1063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)