myRT

myRT report for GCA_000416645.2_ASM41664v2

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Seq: AOKF01003553.1 Pseudomonas syringae pv. actinidiae ICMP 19096 scaffold671, whole genome shotgun sequence (2530 bp)
Overview 1 RT 1: 1-2358 bp Neighborhood of RT #1 [1, 2358] RVT-UG15 Feature: gene Location: 1-1066 bp Ori: EPN35086.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 448-859 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 448-859 bp Feature: gene Location: 2182-2358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15

Seq: AOKF01003552.1 Pseudomonas syringae pv. actinidiae ICMP 19096 scaffold504, whole genome shotgun sequence (2933 bp)
Overview 1 RT 1: 89-2854 bp Neighborhood of RT #1 [89, 2933] Zn_Tnp_IS91 RVT-GII HopW1-1 Feature: gene Location: 89-619 bp Ori: EPN35090.1 Feature: domain Description: Zn_Tnp_IS91 Location: 197-461 bp Feature: domain Description: Zn_Tnp_IS91 Location: 197-461 bp Feature: gene Location: 1516-1695 bp Ori: EPN35091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1519-1684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1519-1684 bp Feature: gene Location: 1909-2933 bp Ori: EPN35092.1 Feature: domain Description: HopW1-1 Location: 1912-2854 bp Feature: domain Description: HopW1-1 Location: 1912 -2 854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS91 (pfam14319), RVT-GII, HopW1-1 (pfam15457)

Seq: AOKF01003159.1 Pseudomonas syringae pv. actinidiae ICMP 19096 scaffold120, whole genome shotgun sequence (5484 bp)
Overview 1 RT 1: 108-4863 bp Neighborhood of RT #1 [108, 4952] MscS RVT-Retrons InsE TnpB_IS66 Feature: gene Location: 108-863 bp Ori: EPN39825.1 Feature: domain Description: MscS Location: 168-831 bp Feature: domain Description: MscS Location: 168-83 1 bp Feature: gene Location: 1386-2642 bp Feature: gene Location: 2804-3970 bp Ori: EPN39827.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3059-3680 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 059-3 680 bp Feature: gene Location: 4318-4650 bp Ori: EPN39828.1 Feature: domain Description: InsE Location: 4333-4459 bp Feature: domain Description: InsE Location: 43 3 3 -4459 bp Feature: gene Location: 4647-4952 bp Ori: EPN39829.1 Feature: domain Description: TnpB_IS66 Location: 4695-4863 bp Feature: domain Description: TnpB_IS66 Location: 4695-4863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MscS (COG0668), RVT-Retrons, InsE (COG2963), TnpB_IS66 (pfam05717)