myRT

myRT report for GCA_000416725.1_ASM41672v1

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Seq: AOKN01000530.1 Pseudomonas syringae pv. actinidiae ICMP 19097 scaffold12, whole genome shotgun sequence (46125 bp)
Overview 1 RT 1: 33-2430 bp Neighborhood of RT #1 [33, 3389] COG3666 DDE_Tnp_1_6 RVT-Retrons Feature: gene Location: 33-1256 bp Ori: EPN71953.1 Feature: domain Description: COG3666 Location: 75-516 bp Feature: domain Description: COG3666 Location: 75-51 6 bp Feature: domain Description: DDE_Tnp_1_6 Location: 993-1215 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 993-1 21 5 bp Feature: gene Location: 1680-3389 bp Ori: EPN71954.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1833-2430 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 833-2430 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RVT-Retrons

Seq: AOKN01000510.1 Pseudomonas syringae pv. actinidiae ICMP 19097 scaffold326, whole genome shotgun sequence (4819 bp)
Overview 1 RT 1: 1603-3755 bp Neighborhood of RT #1 [1603, 4507] UvrD_C RVT-UG9 Feature: gene Location: 1603-2547 bp Feature: gene Location: 2908-3498 bp Ori: EPN72243.1 Feature: domain Description: UvrD_C Location: 3232-3427 bp Feature: domain Description: UvrD_C Location: 32 32 -342 7 bp Feature: gene Location: 3596-4507 bp Ori: EPN72244.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3599-3755 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3599-3755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-UG9

Seq: AOKN01000675.1 Pseudomonas syringae pv. actinidiae ICMP 19097 scaffold439, whole genome shotgun sequence (1871 bp)
Overview 1 RT 1: 1-1583 bp Neighborhood of RT #1 [1, 1690] LZ_Tnp_IS66 RVT-GII GIIM Feature: gene Location: 1-199 bp Ori: EPN70078.1 Feature: domain Description: LZ_Tnp_IS66 Location: 4-193 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4-193 bp Feature: gene Location: 422-1690 bp Ori: EPN70079.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626-1283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626-1283 bp Feature: domain Description: GIIM Note: maturase Location: 1361-1583 bp Feature: domain Description: GIIM Note: maturase Location: 13 61-1583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), RVT-GII, GIIM (pfam08388)

Seq: AOKN01000099.1 Pseudomonas syringae pv. actinidiae ICMP 19097 scaffold27, whole genome shotgun sequence (36868 bp)
Overview 1 RT 1: 29762-36323 bp Neighborhood of RT #1 [29762, 36323] modC_ABC Top1 RVT-GII Intron_maturas2 HNHc DUF2625 Feature: gene Location: 29762-30850 bp Ori: EPN80338.1 Feature: domain Description: modC_ABC Location: 29777-30842 bp Feature: domain Description: modC_ABC Location: 29777-3084 2 bp Feature: gene Location: 30939-31994 bp Ori: EPN80339.1 Feature: domain Description: Top1 Location: 30972-31986 bp Feature: domain Description: Top1 Location: 30972-31986 bp Feature: gene Location: 32825-34660 bp Ori: EPN80340.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33086-33899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33086-33899 bp Feature: domain Description: Intron_maturas2 Location: 33995-34310 bp Feature: domain Description: Intron_maturas2 Location: 33995-34 310 bp Feature: domain Description: HNHc Note: nucleases Location: 34433-34598 bp Feature: domain Description: HNHc Note: nucleases Location: 34 4 33-34 598 bp Feature: gene Location: 35098-35733 bp Ori: EPN80341.1 Feature: domain Description: DUF2625 Location: 35110-35698 bp Feature: domain Description: DUF2625 Location: 35110-35698 bp Feature: gene Location: 36135-36323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT modC_ABC (TIGR02142), Top1 (COG3569), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF2625 (pfam10946)

Seq: AOKN01000622.1 Pseudomonas syringae pv. actinidiae ICMP 19097 scaffold451, whole genome shotgun sequence (1699 bp)
Overview 1 RT 1: 88-1198 bp Neighborhood of RT #1 [88, 1371] RVT-GII GIIM Feature: gene Location: 88-1371 bp Ori: EPN70135.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AOKN01000661.1 Pseudomonas syringae pv. actinidiae ICMP 19097 scaffold548, whole genome shotgun sequence (613 bp)
Overview 1 RT 1: 1-448 bp Neighborhood of RT #1 [1, 447] group_II_RT_mat RVT-GII Feature: gene Location: 1-447 bp Ori: EPN70091.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 148-241 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 148-241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII