myRT

myRT report for GCA_000416765.1_ASM41676v1

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Seq: AOKI01000033.1 Pseudomonas syringae pv. actinidiae ICMP 19095 scaffold350, whole genome shotgun sequence (5450 bp)
Overview 1 RT 1: 173-4761 bp Neighborhood of RT #1 [173, 4761] RVT-UG15 SIRT5_Af1_CobB Feature: gene Location: 173-349 bp Feature: gene Location: 1465-3111 bp Ori: EPN46225.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1912-2323 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 91 2-2323 bp Feature: gene Location: 3317-4171 bp Ori: EPN46226.1 Feature: domain Description: SIRT5_Af1_CobB Location: 3446-4133 bp Feature: domain Description: SIRT5_Af1 _CobB Location: 3446-41 33 bp Feature: gene Location: 4426-4761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, SIRT5_Af1_CobB (cd01412)

Seq: AOKI01000445.1 Pseudomonas syringae pv. actinidiae ICMP 19095 scaffold86, whole genome shotgun sequence (18833 bp)
Overview 1 RT 1: 6483-12675 bp Neighborhood of RT #1 [6483, 12707] Pentapeptide Pentapeptide Pentapeptide DUF4427 RVT-Retrons MscS Feature: gene Location: 6483-7013 bp Ori: EPN41176.1 Feature: domain Description: Pentapeptide Location: 6600-6711 bp Feature: domain Description: Pentapeptide Location: 6600-6711 bp Feature: domain Description: Pentapeptide Location: 6717-6822 bp Feature: domain Description: Pentapeptide Location: 6717-682 2 bp Feature: domain Description: Pentapeptide Location: 6837-6933 bp Feature: domain Description: Pentapeptide Location: 6837-6933 bp Feature: gene Location: 7418-8641 bp Ori: EPN41177.1 Feature: domain Description: DUF4427 Location: 8336-8621 bp Feature: domain Description: DUF442 7 Location: 8336-862 1 bp Feature: gene Location: 8845-10011 bp Ori: EPN41178.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9100-9721 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9100-972 1 bp Feature: gene Location: 10173-11429 bp Feature: gene Location: 11952-12707 bp Ori: EPN41180.1 Feature: domain Description: MscS Location: 12012-12675 bp Feature: domain Description: MscS Location: 12 012 -12 675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide (pfam00805), DUF4427 (pfam14468), RVT-Retrons, MscS (COG0668)

Seq: AOKI01000580.1 Pseudomonas syringae pv. actinidiae ICMP 19095 scaffold429, whole genome shotgun sequence (3678 bp)
Overview 1 RT 1: 70-3387 bp Neighborhood of RT #1 [70, 3389] RVT-GII GIIM FecR PRK12528 Feature: gene Location: 70-1437 bp Ori: EPN39450.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403-1018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403 -1018 bp Feature: domain Description: GIIM Note: maturase Location: 1075-1303 bp Feature: domain Description: GIIM Note: maturase Location: 1075-13 03 bp Feature: gene Location: 1912-2889 bp Ori: EPN39451.1 Feature: domain Description: FecR Location: 1933-2884 bp Feature: domain Description: FecR Location: 193 3 -2884 bp Feature: gene Location: 2886-3389 bp Ori: EPN39452.1 Feature: domain Description: PRK12528 Location: 2910-3387 bp Feature: domain Description: PRK12528 Location: 2910-3 3 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FecR (pfam04773), PRK12528 (RNA polymerase sigma factor; Provisional)