myRT

myRT report for GCA_000416825.2_ASM41682v2

Download annotations/find similar RTs

Seq: AOKC01000020.1 Pseudomonas syringae pv. actinidiae ICMP 19100 scaffold260, whole genome shotgun sequence (6636 bp)
Overview 1 RT 1: 253-4814 bp Neighborhood of RT #1 [253, 4814] RVT-UG15 SIRT5_Af1_CobB Feature: gene Location: 253-429 bp Feature: gene Location: 1887-3191 bp Ori: EPN21973.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1992-2403 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 1 992-2403 bp Feature: gene Location: 3478-4251 bp Ori: EPN21974.1 Feature: domain Description: SIRT5_Af1_CobB Location: 3526-4213 bp Feature: domain Description: SIRT5_Af1 _CobB Location: 3526-421 3 bp Feature: gene Location: 4506-4814 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, SIRT5_Af1_CobB (cd01412)

Seq: AOKC01000309.1 Pseudomonas syringae pv. actinidiae ICMP 19100 scaffold93, whole genome shotgun sequence (23134 bp)
Overview 1 RT 1: 6428-12620 bp Neighborhood of RT #1 [6428, 12652] Pentapeptide Pentapeptide Pentapeptide DUF4427 RVT-Retrons MscS Feature: gene Location: 6428-6958 bp Ori: EPN16998.1 Feature: domain Description: Pentapeptide Location: 6545-6656 bp Feature: domain Description: Pentapeptide Location: 6545-6656 bp Feature: domain Description: Pentapeptide Location: 6662-6767 bp Feature: domain Description: Pentapeptide Location: 6662 -6767 bp Feature: domain Description: Pentapeptide Location: 6782-6878 bp Feature: domain Description: Pentapeptide Location: 6782 -6878 bp Feature: gene Location: 7363-8586 bp Ori: EPN16999.1 Feature: domain Description: DUF4427 Location: 8281-8566 bp Feature: domain Description: DUF442 7 Location: 82 81-8566 bp Feature: gene Location: 8790-9956 bp Ori: EPN17000.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9045-9666 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9045-9666 bp Feature: gene Location: 10118-11374 bp Feature: gene Location: 11897-12652 bp Ori: EPN17002.1 Feature: domain Description: MscS Location: 11957-12620 bp Feature: domain Description: MscS Location: 11957-12 62 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide (pfam00805), DUF4427 (pfam14468), RVT-Retrons, MscS (COG0668)

Seq: AOKC01000342.1 Pseudomonas syringae pv. actinidiae ICMP 19100 scaffold303, whole genome shotgun sequence (4315 bp)
Overview 1 RT 1: 762-4181 bp Neighborhood of RT #1 [762, 4315] HtpG DLH RVT-GII GIIM Feature: gene Location: 762-2669 bp Ori: EPN15873.1 Feature: domain Description: HtpG Location: 777-2658 bp Feature: domain Description: HtpG Location: 777-2658 bp Feature: gene Location: 2760-3488 bp Ori: EPN15874.1 Feature: domain Description: DLH Location: 2787-3486 bp Feature: domain Description: DLH Location: 2787-3 486 bp Feature: gene Location: 3746-4315 bp Ori: EPN15875.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3749-3896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 749-3 896 bp Feature: domain Description: GIIM Note: maturase Location: 3953-4181 bp Feature: domain Description: GIIM Note: maturase Location: 3 953 -4181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HtpG (COG0326), DLH (pfam01738), RVT-GII, GIIM (pfam08388)