myRT

myRT report for GCA_000416885.1_ASM41688v1

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Seq: AOJW01000040.1 Pseudomonas syringae pv. actinidiae ICMP 19072 scaffold8, whole genome shotgun sequence (84221 bp)
Overview 1 RT 1: 66913-73756 bp 2 RT 2: 81833-84039 bp Neighborhood of RT #1 [66913, 73756] Phenol_MetA_deg Mrr_cat_2 RVT-UG2 COG4951 SSL2 Neighborhood of RT #2 [81833, 84039] TAS_TAS_TAS_TIGR02293 RVT-Retrons Feature: gene Location: 66913-67800 bp Ori: EPM79854.1 Feature: domain Description: Phenol_MetA_deg Location: 67084-67786 bp Feature: domain Description: Phenol_MetA_deg Location: 67084-67786 bp Feature: gene Location: 67980-68432 bp Ori: EPM79855.1 Feature: domain Description: Mrr_cat_2 Location: 68085-68334 bp Feature: domain Description: Mrr_cat_2 Location: 68085-68334 bp Feature: gene Location: 68929-69807 bp Ori: EPM79856.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 68932-69508 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 68932-69508 bp Feature: gene Location: 70841-73228 bp Ori: EPM79857.1 Feature: domain Description: COG4951 Location: 70850-71987 bp Feature: domain Description: COG4951 Location: 70850-71 987 bp Feature: domain Description: SSL2 Location: 72023-73175 bp Feature: domain Description: SSL2 Location: 72023-731 75 bp Feature: gene Location: 73400-73756 bp Feature: gene Location: 81833-82219 bp Ori: EPM79866.1 Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 81887-82217 bp Feature: domain Description: TAS_TAS_TAS_TIGR02293 Location: 81 887-8221 7 bp Feature: gene Location: 82447-82677 bp Feature: gene Location: 82678-83721 bp Ori: EPM79868.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82813-83383 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8281 3-83383 bp Feature: gene Location: 83797-84039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phenol_MetA_deg (pfam13557), Mrr_cat_2 (pfam13156), RVT-UG2, COG4951 (Uncharacterized protein ), SSL2 (COG1061), TAS_TAS_TAS_TIGR02293, RVT-Retrons

Seq: AOJW01000082.1 Pseudomonas syringae pv. actinidiae ICMP 19072 scaffold64, whole genome shotgun sequence (35255 bp)
Overview 1 RT 1: 31771-35074 bp Neighborhood of RT #1 [31771, 35247] YqfA PRK11713 RVT-GII GIIM Feature: gene Location: 31771-32385 bp Ori: EPM79054.1 Feature: domain Description: YqfA Location: 31786-32380 bp Feature: domain Description: YqfA Location: 31786-32 380 bp Feature: gene Location: 32588-33307 bp Ori: EPM79055.1 Feature: domain Description: PRK11713 Location: 32600-33302 bp Feature: domain Description: PRK11713 Location: 32 600-33302 bp Feature: gene Location: 33964-35247 bp Ori: EPM79056.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34204-34819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 04-34819 bp Feature: domain Description: GIIM Note: maturase Location: 34864-35074 bp Feature: domain Description: GIIM Note: maturase Location: 34864-35074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqfA (COG4864), PRK11713 (16S ribosomal RNA methyltransferase RsmE; Provisional), RVT-GII, GIIM (pfam08388)

Seq: AOJW01000259.1 Pseudomonas syringae pv. actinidiae ICMP 19072 scaffold189, whole genome shotgun sequence (5228 bp)
Overview 1 RT 1: 1-2627 bp Neighborhood of RT #1 [1, 2627] RVT-GII Feature: gene Location: 1-189 bp Ori: EPM74020.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52-187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52-187 bp Feature: gene Location: 357-2627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AOJW01000125.1 Pseudomonas syringae pv. actinidiae ICMP 19072 scaffold124, whole genome shotgun sequence (17226 bp)
Overview 1 RT 1: 1-3271 bp Neighborhood of RT #1 [1, 3741] RVT-GII Acetyltransf_1 PrtC DUF3656 Feature: gene Location: 1-579 bp Ori: EPM77600.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334 -580 bp Feature: gene Location: 1122-1688 bp Ori: EPM77601.1 Feature: domain Description: Acetyltransf_1 Location: 1338-1626 bp Feature: domain Description: Acetyltransf_1 Location: 1338-1626 bp Feature: gene Location: 1735-3741 bp Ori: EPM77602.1 Feature: domain Description: PrtC Location: 1753-2644 bp Feature: domain Description: PrtC Location: 1753-264 4 bp Feature: domain Description: DUF3656 Location: 2932-3271 bp Feature: domain Description: DUF3656 Location: 2932-3271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Acetyltransf_1 (pfam00583), PrtC (COG0826), DUF3656 (pfam12392)