myRT

myRT report for GCA_000416905.2_ASM41690v2

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Seq: AOJU01004044.1 Pseudomonas syringae pv. actinidiae ICMP 18804 scaffold3635, whole genome shotgun sequence (280 bp)
Overview 1 RT 1: 1-223 bp Neighborhood of RT #1 [1, 280] RVT-GII Feature: gene Location: 1-280 bp Ori: EPM65342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AOJU01000211.1 Pseudomonas syringae pv. actinidiae ICMP 18804 scaffold119, whole genome shotgun sequence (4692 bp)
Overview 1 RT 1: 1-3860 bp Neighborhood of RT #1 [1, 3886] HopW1-1 RVT-GII IS5 Feature: gene Location: 1-930 bp Ori: EPN22390.1 Feature: domain Description: HopW1-1 Location: 4-925 bp Feature: domain Description: HopW1-1 Location: 4-92 5 bp Feature: gene Location: 1144-1323 bp Ori: EPN22391.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147-1312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147-1312 bp Feature: gene Location: 3150-3476 bp Feature: gene Location: 3668-3886 bp Ori: EPN22393.1 Feature: domain Description: IS5 Location: 3692-3860 bp Feature: domain Description: IS5 Location: 3692 -3860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HopW1-1 (pfam15457), RVT-GII, IS5 (COG3039)

Seq: AOJU01003240.1 Pseudomonas syringae pv. actinidiae ICMP 18804 scaffold1128, whole genome shotgun sequence (1171 bp)
Overview 1 RT 1: 447-1170 bp Neighborhood of RT #1 [447, 1171] RVT-GII Feature: gene Location: 447-1171 bp Ori: EPM79581.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780-1170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 780-1170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AOJU01000210.1 Pseudomonas syringae pv. actinidiae ICMP 18804 scaffold86, whole genome shotgun sequence (5472 bp)
Overview 1 RT 1: 205-4174 bp Neighborhood of RT #1 [205, 4203] RVT-UG15 PRK00481 Feature: gene Location: 205-381 bp Feature: gene Location: 1497-3143 bp Ori: EPN22407.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1944-2355 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 194 4 -2355 bp Feature: gene Location: 3550-3798 bp Feature: gene Location: 3928-4203 bp Ori: EPN22409.1 Feature: domain Description: PRK00481 Location: 3931-4174 bp Feature: domain Description: PRK004 81 Location: 3931-4 174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG15, PRK00481 (NAD-dependent deacetylase; Provisional)

Seq: AOJU01004055.1 Pseudomonas syringae pv. actinidiae ICMP 18804 scaffold9, whole genome shotgun sequence (12336 bp)
Overview 1 RT 1: 6358-12316 bp Neighborhood of RT #1 [6358, 12336] Pentapeptide Pentapeptide Pentapeptide DUF4427 RVT-Retrons MS_channel Feature: gene Location: 6358-6960 bp Ori: EPM65248.1 Feature: domain Description: Pentapeptide Location: 6547-6658 bp Feature: domain Description: Pentapeptide Location: 65 47-665 8 bp Feature: domain Description: Pentapeptide Location: 6664-6769 bp Feature: domain Description: Pentapeptide Location: 6664-6769 bp Feature: domain Description: Pentapeptide Location: 6784-6880 bp Feature: domain Description: Pentapeptide Location: 6784-6880 bp Feature: gene Location: 7365-8588 bp Ori: EPM65249.1 Feature: domain Description: DUF4427 Location: 8283-8568 bp Feature: domain Description: DUF4427 Location: 8283-85 68 bp Feature: gene Location: 8792-9958 bp Ori: EPM65250.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9047-9668 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9047-9668 bp Feature: gene Location: 10120-11376 bp Feature: gene Location: 11899-12336 bp Ori: EPM65252.1 Feature: domain Description: MS_channel Location: 11986-12316 bp Feature: domain Description: MS_channel Location: 11986-12316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide (pfam00805), DUF4427 (pfam14468), RVT-Retrons, MS_channel (pfam00924)