myRT

myRT report for GCA_000416925.1_ASM41692v1

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Seq: AOJT01001304.1 Pseudomonas syringae pv. actinidiae ICMP 18886 scaffold344, whole genome shotgun sequence (5226 bp)
Overview 1 RT 1: 1-1961 bp Neighborhood of RT #1 [1, 1961] RVT-GII Alanine_zipper Feature: gene Location: 1-288 bp Ori: EPM70489.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 72-286 bp Feature: gene Location: 1304-1555 bp Ori: EPM70490.1 Feature: domain Description: Alanine_zipper Location: 1382-1553 bp Feature: domain Description: Alanine_zipper Location: 1 382-1 553 bp Feature: gene Location: 1863-1961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Alanine_zipper (pfam11839)

Seq: AOJT01001481.1 Pseudomonas syringae pv. actinidiae ICMP 18886 scaffold379, whole genome shotgun sequence (4899 bp)
Overview 1 RT 1: 1-4489 bp Neighborhood of RT #1 [1, 4623] PGM_like3 RVT-GII GIIM Feature: gene Location: 1-1160 bp Feature: gene Location: 1261-2907 bp Ori: EPM68450.1 Feature: domain Description: PGM_like3 Location: 1324-2884 bp Feature: domain Description: PGM_like3 Location: 132 4-2 884 bp Feature: gene Location: 3259-4623 bp Ori: EPM68451.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3592-4204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3592 -42 04 bp Feature: domain Description: GIIM Note: maturase Location: 4261-4489 bp Feature: domain Description: GIIM Note: maturase Location: 42 61-4489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PGM_like3 (cd05801), RVT-GII, GIIM (pfam08388)

Seq: AOJT01001419.1 Pseudomonas syringae pv. actinidiae ICMP 18886 scaffold153, whole genome shotgun sequence (9017 bp)
Overview 1 RT 1: 551-7104 bp Neighborhood of RT #1 [551, 7112] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 551-739 bp Feature: gene Location: 1012-1776 bp Ori: EPM69585.1 Feature: domain Description: DUF2625 Location: 1153-1741 bp Feature: domain Description: DUF2625 Location: 1153 -1741 bp Feature: gene Location: 2214-4049 bp Ori: EPM69586.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2475-3288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2475-3 288 bp Feature: domain Description: Intron_maturas2 Location: 3384-3699 bp Feature: domain Description: Intron_maturas2 Location: 3 3 84-3 699 bp Feature: domain Description: HNHc Note: nucleases Location: 3822-3987 bp Feature: domain Description: HNHc Note: nucleases Location: 3 822-3 987 bp Feature: gene Location: 4880-5935 bp Ori: EPM69587.1 Feature: domain Description: Top1 Location: 4913-5927 bp Feature: domain Description: Top1 Location: 4913 -5927 bp Feature: gene Location: 6024-7112 bp Ori: EPM69588.1 Feature: domain Description: modC_ABC Location: 6039-7104 bp Feature: domain Description: modC_ABC Location: 603 9-7104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: AOJT01001716.1 Pseudomonas syringae pv. actinidiae ICMP 18886 scaffold1163, whole genome shotgun sequence (1064 bp)
Overview 1 RT 1: 1-957 bp Neighborhood of RT #1 [1, 1064] RVT-GII GIIM Feature: gene Location: 1-284 bp Feature: gene Location: 342-1064 bp Ori: EPM64902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354 -657 bp Feature: domain Description: GIIM Note: maturase Location: 735-957 bp Feature: domain Description: GIIM Note: maturase Location: 735-957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AOJT01001711.1 Pseudomonas syringae pv. actinidiae ICMP 18886 scaffold1219, whole genome shotgun sequence (946 bp)
Overview 1 RT 1: 1-616 bp Neighborhood of RT #1 [1, 616] RVT-GII Feature: gene Location: 1-616 bp Ori: EPM64952.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205 -616 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AOJT01000149.1 Pseudomonas syringae pv. actinidiae ICMP 18886 scaffold42, whole genome shotgun sequence (16128 bp)
Overview 1 RT 1: 12772-16087 bp Neighborhood of RT #1 [12772, 16128] RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 12772-14481 bp Ori: EPM89599.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12925-13522 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12925-13522 bp Feature: gene Location: 14905-16128 bp Ori: EPM89600.1 Feature: domain Description: COG3666 Location: 14947-15388 bp Feature: domain Description: COG36 6 6 Location: 14947-15388 bp Feature: domain Description: DDE_Tnp_1_6 Location: 15865-16087 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1586 5-16 087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: AOJT01000194.1 Pseudomonas syringae pv. actinidiae ICMP 18886 scaffold390, whole genome shotgun sequence (4784 bp)
Overview 1 RT 1: 313-3217 bp Neighborhood of RT #1 [313, 3217] RVT-UG9 UvrD_C Feature: gene Location: 313-1224 bp Ori: EPM88753.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 316-472 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 316-47 2 bp Feature: gene Location: 1322-1912 bp Ori: EPM88754.1 Feature: domain Description: UvrD_C Location: 1646-1841 bp Feature: domain Description: UvrD_C Location: 1646-1841 bp Feature: gene Location: 2273-3217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: AOJT01001741.1 Pseudomonas syringae pv. actinidiae ICMP 18886 scaffold909, whole genome shotgun sequence (1764 bp)
Overview 1 RT 1: 1-1111 bp Neighborhood of RT #1 [1, 1252] RVT-GII GIIM Feature: gene Location: 1-1252 bp Ori: EPM64677.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241-8 56 bp Feature: domain Description: GIIM Note: maturase Location: 901-1111 bp Feature: domain Description: GIIM Note: maturase Location: 901-1111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)