myRT

myRT report for GCA_000416945.1_ASM41694v1

Download annotations/find similar RTs

Seq: AOKQ01000076.1 Pseudomonas syringae pv. actinidiae ICMP 18801 scaffold296, whole genome shotgun sequence (4793 bp)
Overview 1 RT 1: 313-3217 bp Neighborhood of RT #1 [313, 3217] RVT-UG9 UvrD_C Feature: gene Location: 313-1224 bp Ori: EPN83802.1 Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 316-472 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 31 6-472 bp Feature: gene Location: 1322-1912 bp Ori: EPN83803.1 Feature: domain Description: UvrD_C Location: 1646-1841 bp Feature: domain Description: UvrD_C Location: 1 646-1 841 bp Feature: gene Location: 2273-3217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG9, UvrD_C (pfam13361)

Seq: AOKQ01000594.1 Pseudomonas syringae pv. actinidiae ICMP 18801 scaffold469, whole genome shotgun sequence (858 bp)
Overview 1 RT 1: 86-851 bp Neighborhood of RT #1 [86, 858] RVT-GII Feature: gene Location: 86-858 bp Ori: EPN74417.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 680-851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 680-851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AOKQ01000592.1 Pseudomonas syringae pv. actinidiae ICMP 18801 scaffold390, whole genome shotgun sequence (1860 bp)
Overview 1 RT 1: 1-1343 bp Neighborhood of RT #1 [1, 1450] RVT-GII GIIM Feature: gene Location: 1-94 bp Feature: gene Location: 182-1450 bp Ori: EPN74423.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-1043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 86-1043 bp Feature: domain Description: GIIM Note: maturase Location: 1121-1343 bp Feature: domain Description: GIIM Note: maturase Location: 1121-13 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: AOKQ01000471.1 Pseudomonas syringae pv. actinidiae ICMP 18801 scaffold196, whole genome shotgun sequence (10380 bp)
Overview 1 RT 1: 551-7104 bp Neighborhood of RT #1 [551, 7112] DUF2625 RVT-GII Intron_maturas2 HNHc Top1 modC_ABC Feature: gene Location: 551-739 bp Feature: gene Location: 1141-1776 bp Ori: EPN76754.1 Feature: domain Description: DUF2625 Location: 1153-1741 bp Feature: domain Description: DUF2625 Location: 1153-174 1 bp Feature: gene Location: 2214-4049 bp Ori: EPN76755.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2475-3288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 75-3288 bp Feature: domain Description: Intron_maturas2 Location: 3384-3699 bp Feature: domain Description: Intron_maturas2 Location: 3384 -3699 bp Feature: domain Description: HNHc Note: nucleases Location: 3822-3987 bp Feature: domain Description: HNHc Note: nucleases Location: 3822-3987 bp Feature: gene Location: 4880-5935 bp Ori: EPN76756.1 Feature: domain Description: Top1 Location: 4913-5927 bp Feature: domain Description: Top1 Location: 4 913-5927 bp Feature: gene Location: 6024-7112 bp Ori: EPN76757.1 Feature: domain Description: modC_ABC Location: 6039-7104 bp Feature: domain Description: modC_ABC Location: 6039-7104 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2625 (pfam10946), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Top1 (COG3569), modC_ABC (TIGR02142)

Seq: AOKQ01000056.1 Pseudomonas syringae pv. actinidiae ICMP 18801 scaffold15, whole genome shotgun sequence (46140 bp)
Overview 1 RT 1: 42784-46099 bp Neighborhood of RT #1 [42784, 46140] RVT-Retrons COG3666 DDE_Tnp_1_6 Feature: gene Location: 42784-44493 bp Ori: EPN84090.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42937-43534 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42937-435 34 bp Feature: gene Location: 44917-46140 bp Ori: EPN84091.1 Feature: domain Description: COG3666 Location: 44959-45400 bp Feature: domain Description: COG3666 Location: 4495 9-45 400 bp Feature: domain Description: DDE_Tnp_1_6 Location: 45877-46099 bp Feature: domain Description: DDE_Tnp_1_6 Location: 45 877-46099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: AOKQ01000079.1 Pseudomonas syringae pv. actinidiae ICMP 18801 scaffold400, whole genome shotgun sequence (1733 bp)
Overview 1 RT 1: 88-1198 bp Neighborhood of RT #1 [88, 1371] RVT-GII GIIM Feature: gene Location: 88-1371 bp Ori: EPN83778.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 328-943 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Feature: domain Description: GIIM Note: maturase Location: 988-1198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)