myRT

myRT report for GCA_000417465.1_gkp32v01

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Seq: ARSM01000119.1 Klebsiella pneumoniae UHKPC179 contig00052, whole genome shotgun sequence (120189 bp)
Overview 1 RT 1: 363-7450 bp Neighborhood of RT #1 [363, 7467] PRK09692 RVT-UG4 FimD FimC Feature: gene Location: 363-1226 bp Ori: EPO89545.1 Feature: domain Description: PRK09692 Location: 387-1224 bp Feature: domain Description: PRK09692 Location: 387-1 224 bp Feature: gene Location: 1984-4056 bp Ori: EPO89522.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2386-2830 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2386-2830 bp Feature: gene Location: 4062-6656 bp Ori: EPO89593.1 Feature: domain Description: FimD Location: 4104-6645 bp Feature: domain Description: FimD Location: 41 04-6645 bp Feature: gene Location: 6703-7467 bp Ori: EPO89525.1 Feature: domain Description: FimC Location: 6748-7450 bp Feature: domain Description: FimC Location: 6748-7450 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: ARSM01000047.1 Klebsiella pneumoniae UHKPC179 contig00139, whole genome shotgun sequence (3132 bp)
Overview 1 RT 1: 1-3115 bp Neighborhood of RT #1 [1, 3129] PHA02517 RVT-GII GIIM InsE Feature: gene Location: 1-108 bp Ori: EPO96225.1 Feature: domain Description: PHA02517 Location: 4-109 bp Feature: domain Description: PHA02 517 Location: 4-109 bp Feature: gene Location: 261-1784 bp Ori: EPO96227.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-12 66 bp Feature: domain Description: GIIM Note: maturase Location: 1341-1539 bp Feature: domain Description: GIIM Note: maturase Location: 1341-1539 bp Feature: gene Location: 2857-3129 bp Ori: EPO96226.1 Feature: domain Description: InsE Location: 2866-3115 bp Feature: domain Description: InsE Location: 2 866-3115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: ARSM01000033.1 Klebsiella pneumoniae UHKPC179 contig00114, whole genome shotgun sequence (4182 bp)
Overview 1 RT 1: 1043-3595 bp Neighborhood of RT #1 [1043, 3987] Antirestrict RVT-GII Feature: gene Location: 1043-1468 bp Ori: EPO97033.1 Feature: domain Description: Antirestrict Location: 1178-1466 bp Feature: domain Description: Antirestrict Location: 1178-1466 bp Feature: gene Location: 1988-2218 bp Feature: gene Location: 2452-3987 bp Ori: EPO97035.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2857-3595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2857-3 595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII

Seq: ARSM01000065.1 Klebsiella pneumoniae UHKPC179 contig00104, whole genome shotgun sequence (1937 bp)
Overview 1 RT 1: 255-1350 bp Neighborhood of RT #1 [255, 1742] RVT-GII Feature: gene Location: 255-1742 bp Ori: EPO95287.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 660-1350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII