myRT

myRT report for GCA_000419765.1_ASM41976v1

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Seq: ATTQ01000005.1 Rhizobium mongolense USDA 1844 A3C3DRAFT_scaffold_4.5_C, whole genome shotgun sequence (421690 bp)
Overview 1 RT 1: 319987-324827 bp Neighborhood of RT #1 [319987, 324827] PRK10787 BHL RVT-GII Feature: gene Location: 319987-322404 bp Feature: domain Description: PRK10787 Location: 320026-322321 bp Feature: domain Description: PRK1 0787 Location: 320026-322321 bp Feature: gene Location: 322610-322885 bp Feature: domain Description: BHL Location: 322613-322880 bp Feature: domain Description: BHL Location: 32261 3-322880 bp Feature: gene Location: 323158-324312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323761-324160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 323761 -3241 60 bp Feature: gene Location: 324318-324548 bp Feature: gene Location: 324579-324827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10787 (DNA-binding ATP-dependent protease La; Provisional), BHL (smart00411), RVT-GII

Seq: ATTQ01000013.1 Rhizobium mongolense USDA 1844 A3C3DRAFT_scaffold_12.13_C, whole genome shotgun sequence (150614 bp)
Overview 1 RT 1: 22970-29349 bp Neighborhood of RT #1 [22970, 29349] TIR_2 RVT-Retrons TIR_2 Patatin_and_cPLA2 Feature: gene Location: 22970-23431 bp Feature: gene Location: 23522-24373 bp Feature: domain Description: TIR_2 Location: 23978-24299 bp Feature: domain Description: TIR_2 Location: 2 3978-2 42 99 bp Feature: gene Location: 24419-25927 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24578-25187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 4578-2 5187 bp Feature: domain Description: TIR_2 Location: 25493-25823 bp Feature: domain Description: TIR_2 Location: 2 5493-2 582 3 bp Feature: gene Location: 26255-28990 bp Feature: domain Description: Patatin_and_cPLA2 Location: 26984-27164 bp Feature: domain Description: Patatin_and_cPLA2 Location: 2 6984-2 7164 bp Feature: gene Location: 29083-29349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), RVT-Retrons, Patatin_and_cPLA2 (cl11396)

Seq: ATTQ01000020.1 Rhizobium mongolense USDA 1844 A3C3DRAFT_scaffold_19.20_C, whole genome shotgun sequence (113481 bp)
Overview 1 RT 1: 43814-50041 bp Neighborhood of RT #1 [43814, 50041] YbjD SLATT_5 RVT-UG12 Feature: gene Location: 43814-45895 bp Feature: domain Description: YbjD Location: 44111-45890 bp Feature: domain Description: YbjD Location: 44111-45890 bp Feature: gene Location: 46100-46771 bp Feature: domain Description: SLATT_5 Location: 46169-46697 bp Feature: domain Description: SLATT_5 Location: 46169-46697 bp Feature: gene Location: 46781-48469 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 47210-47609 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 47210-47609 bp Feature: gene Location: 48860-49162 bp Feature: gene Location: 49463-50041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), SLATT_5 (pfam18160), RVT-UG12

Seq: ATTQ01000045.1 Rhizobium mongolense USDA 1844 A3C3DRAFT_scaffold_44.45_C, whole genome shotgun sequence (18700 bp)
Overview 1 RT 1: 11971-17145 bp Neighborhood of RT #1 [11971, 17145] aspA ectoine_eutB ectoine_eutC RVT-GII group_II_RT_mat RVT-GII GIIM Feature: gene Location: 11971-13188 bp Feature: domain Description: aspA Location: 11977-12100 bp Feature: domain Description: aspA Location: 11977-12100 bp Feature: domain Description: ectoine_eutB Location: 12211-13159 bp Feature: domain Description: ectoine_eutB Location: 12211-13159 bp Feature: gene Location: 13188-14180 bp Feature: domain Description: ectoine_eutC Location: 13200-14175 bp Feature: domain Description: ectoine_eutC Location: 13200-14 175 bp Feature: gene Location: 14488-14703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14497-14692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 4 97-14 692 bp Feature: gene Location: 14958-15245 bp Feature: gene Location: 15244-15681 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 15280-15460 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 15280-154 60 bp Feature: gene Location: 15510-16502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15513-16104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15513-16104 bp Feature: domain Description: GIIM Note: maturase Location: 16185-16404 bp Feature: domain Description: GIIM Note: maturase Location: 16185-164 04 bp Feature: gene Location: 16412-16807 bp Feature: gene Location: 16867-17145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT aspA (TIGR00839), ectoine_eutB (TIGR02991), ectoine_eutC (TIGR02992), RVT-GII, group_II_RT_mat (TIGR04416), GIIM (pfam08388)

Seq: ATTQ01000074.1 Rhizobium mongolense USDA 1844 A3C3DRAFT_scaffold_73.74_C, whole genome shotgun sequence (4717 bp)
Overview 1 RT 1: 2226-4710 bp Neighborhood of RT #1 [2226, 4715] RVT-GII DDE_Tnp_1_5 Feature: gene Location: 2226-2633 bp Feature: gene Location: 2635-2958 bp Feature: gene Location: 3057-3875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3078-3498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3078-3498 bp Feature: gene Location: 4049-4369 bp Feature: gene Location: 4491-4715 bp Feature: domain Description: DDE_Tnp_1_5 Location: 4587-4710 bp Feature: domain Description: DDE_Tnp_1_5 Location: 45 87-4710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1_5 (pfam13737)