myRT

myRT report for GCA_000419945.2_ASM41994v2

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Seq: ATTZ02000005.1 Sphingomonas sp. JGI 0001002-C18 C867DRAFT_contig_4.5_C, whole genome shotgun sequence (28827 bp)
Overview 1 RT 1: 3-7077 bp 2 RT 2: 19347-26991 bp Neighborhood of RT #1 [3, 7115] INT_RitB_C_like INT_C_like_1 HTH_17 RVT-CRISPR-like RhsA RhsA RhsA RHS_repeat Rhs_assc_core YbbA TPR_16 Neighborhood of RT #2 [19347, 27080] YbbA TPR_16 RhsA RhsA RhsA RHS_repeat Rhs_assc_core RVT-CRISPR-like HTH_17 INT_RitB_C_like INT_C_like_1 Feature: gene Location: 3-1070 bp Feature: domain Description: INT_RitB_C_like Location: 135-309 bp Feature: domain Description: INT_RitB_C_like Location: 1 35-309 bp Feature: domain Description: INT_C_like_1 Location: 396-981 bp Feature: domain Description: INT_C_like_1 Location: 396-981 bp Feature: gene Location: 1378-1575 bp Feature: domain Description: HTH_17 Location: 1420-1543 bp Feature: domain Description: HTH_1 7 Location: 1 420-1 543 bp Feature: gene Location: 1580-2977 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1940-2480 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1 940-2480 bp Feature: gene Location: 2989-4851 bp Feature: domain Description: RhsA Location: 3016-3133 bp Feature: domain Description: RhsA Location: 301 6-31 33 bp Feature: domain Description: RhsA Location: 3154-3250 bp Feature: domain Description: RhsA Location: 31 54-3250 bp Feature: domain Description: RhsA Location: 3259-3514 bp Feature: domain Description: RhsA Location: 3259-351 4 bp Feature: domain Description: RHS_repeat Location: 3706-3772 bp Feature: domain Description: RHS_repeat Location: 3706-3772 bp Feature: domain Description: Rhs_assc_core Location: 4075-4294 bp Feature: domain Description: Rhs_assc_core Location: 4075-4294 bp Feature: gene Location: 5937-7115 bp Feature: domain Description: YbbA Location: 6045-6783 bp Feature: domain Description: YbbA Location: 6045-6783 bp Feature: domain Description: TPR_16 Location: 6894-7077 bp Feature: domain Description: TPR_1 6 Location: 6894-7077 bp Feature: gene Location: 19347-20525 bp Feature: domain Description: YbbA Location: 19455-20193 bp Feature: domain Description: YbbA Location: 1 9455-201 93 bp Feature: domain Description: TPR_16 Location: 20304-20487 bp Feature: domain Description: TPR_1 6 Location: 20304-20487 bp Feature: gene Location: 21611-23473 bp Feature: domain Description: RhsA Location: 21638-21755 bp Feature: domain Description: RhsA Location: 21 638-21 755 bp Feature: domain Description: RhsA Location: 21776-21872 bp Feature: domain Description: RhsA Location: 21 776-21 872 bp Feature: domain Description: RhsA Location: 21881-22136 bp Feature: domain Description: RhsA Location: 21 881 -221 36 bp Feature: domain Description: RHS_repeat Location: 22328-22394 bp Feature: domain Description: RHS_repeat Location: 22328-22394 bp Feature: domain Description: Rhs_assc_core Location: 22697-22916 bp Feature: domain Description: Rhs_assc_core Location: 22697-2291 6 bp Feature: gene Location: 23485-24882 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 23845-24385 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 23845-24385 bp Feature: gene Location: 24887-25084 bp Feature: domain Description: HTH_17 Location: 24929-25052 bp Feature: domain Description: HTH_1 7 Location: 24929-25052 bp Feature: gene Location: 25392-27080 bp Feature: domain Description: INT_RitB_C_like Location: 26145-26319 bp Feature: domain Description: INT_RitB_C_like Location: 261 45-2631 9 bp Feature: domain Description: INT_C_like_1 Location: 26406-26991 bp Feature: domain Description: INT_C_like_1 Location: 26406-26991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), INT_C_like_1 (cd01184), HTH_17 (pfam12728), RVT-CRISPR, RhsA (COG3209), RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696), YbbA (COG4181), TPR_16 (pfam13432)