myRT

myRT report for GCA_000420085.1_ASM42008v1

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Seq: ATUG01000001.1 Desulfospira joergensenii DSM 10085 F608DRAFT_scaffold00001.1_C, whole genome shotgun sequence (2428772 bp)
Overview 1 RT 1: 175634-180450 bp 2 RT 2: 506372-509746 bp Neighborhood of RT #1 [175634, 180509] AraC RVT-GII AcrR CODH Neighborhood of RT #2 [506372, 509746] RVT-GII GIIM Feature: gene Location: 175634-176449 bp Feature: domain Description: AraC Location: 176123-176423 bp Feature: domain Description: AraC Location: 1 761 23-1 76423 bp Feature: gene Location: 176914-177123 bp Feature: gene Location: 177186-177383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177198-177315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 771 98-1 7731 5 bp Feature: gene Location: 177572-178237 bp Feature: domain Description: AcrR Location: 177632-178157 bp Feature: domain Description: AcrR Location: 1 77632-1 781 57 bp Feature: gene Location: 178479-180509 bp Feature: domain Description: CODH Location: 178557-180450 bp Feature: domain Description: CODH Location: 1 78557-1 80450 bp Feature: gene Location: 506372-506689 bp Feature: gene Location: 506841-507677 bp Feature: gene Location: 507785-509095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508055-508673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508055-508673 bp Feature: domain Description: GIIM Note: maturase Location: 508724-508955 bp Feature: domain Description: GIIM Note: maturase Location: 508724-508955 bp Feature: gene Location: 509324-509572 bp Feature: gene Location: 509588-509746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC (COG2207), RVT-GII, AcrR (COG1309), CODH (cd01915), GIIM (pfam08388)

Seq: ATUG01000002.1 Desulfospira joergensenii DSM 10085 F608DRAFT_scaffold00002.2_C, whole genome shotgun sequence (2416792 bp)
Overview 1 RT 1: 157632-160087 bp 2 RT 2: 1193036-1197702 bp Neighborhood of RT #1 [157632, 160104] ParE PhdYeFM_antitox RVT-GII RhtB Neighborhood of RT #2 [1193036, 1197702] RVT-UG8 Feature: gene Location: 157632-157928 bp Feature: domain Description: ParE Location: 157635-157908 bp Feature: domain Description: ParE Location: 157635-157908 bp Feature: gene Location: 157925-158206 bp Feature: domain Description: PhdYeFM_antitox Location: 157952-158162 bp Feature: domain Description: PhdYeFM_antitox Location: 157952 -158162 bp Feature: gene Location: 158333-159040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158408-158669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158408-158669 bp Feature: gene Location: 159107-159274 bp Feature: gene Location: 159379-160104 bp Feature: domain Description: RhtB Location: 159457-160087 bp Feature: domain Description: RhtB Location: 159457-160087 bp Feature: gene Location: 1193036-1193164 bp Feature: gene Location: 1193443-1194399 bp Feature: gene Location: 1194859-1196604 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1195099-1195549 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1195099-1195549 bp Feature: gene Location: 1196432-1196620 bp Feature: gene Location: 1196695-1197702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParE (COG3668), PhdYeFM_antitox (pfam02604), RVT-GII, RhtB (COG1280), RVT-UG8

Seq: ATUG01000003.1 Desulfospira joergensenii DSM 10085 F608DRAFT_scaffold00003.3_C, whole genome shotgun sequence (1215198 bp)
Overview 1 RT 1: 1046655-1050276 bp 2 RT 2: 1129121-1132356 bp Neighborhood of RT #1 [1046655, 1050276] InsE HTH_21 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [1129121, 1132356] RVT-GII GIIM HTH_32 rve Feature: gene Location: 1046655-1046939 bp Feature: domain Description: InsE Location: 1046658-1046925 bp Feature: domain Description: InsE Location: 1046658-1046925 bp Feature: gene Location: 1046960-1047367 bp Feature: domain Description: HTH_21 Location: 1047068-1047230 bp Feature: domain Description: HTH_21 Location: 1047068-104723 0 bp Feature: gene Location: 1047868-1049130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1048072-1048729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1048072-1048729 bp Feature: domain Description: GIIM Note: maturase Location: 1048810-1049029 bp Feature: domain Description: GIIM Note: maturase Location: 1048810-1049029 bp Feature: gene Location: 1049220-1049657 bp Feature: domain Description: PHA02517 Location: 1049223-1049631 bp Feature: domain Description: PHA02517 Location: 1049223 -104963 1 bp Feature: gene Location: 1049767-1050276 bp Feature: gene Location: 1129121-1129258 bp Feature: gene Location: 1129297-1129449 bp Feature: gene Location: 1129509-1130819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1129779-1130397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1129779-113 03 97 bp Feature: domain Description: GIIM Note: maturase Location: 1130448-1130679 bp Feature: domain Description: GIIM Note: maturase Location: 113 0448-113 0679 bp Feature: gene Location: 1130883-1131980 bp Feature: domain Description: HTH_32 Location: 1131066-1131279 bp Feature: domain Description: HTH_3 2 Location: 113 1066-113 1279 bp Feature: domain Description: rve Location: 1131429-1131789 bp Feature: domain Description: rve Location: 113 1429-113 1789 bp Feature: gene Location: 1132045-1132356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), HTH_21 (pfam13276), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_32 (pfam13565), rve (pfam00665)